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    HOOK3 hook microtubule tethering protein 3 [ Oxyura jamaicensis (ruddy duck) ]

    Gene ID: 118156240, updated on 20-Mar-2024

    Summary

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    Gene symbol
    HOOK3
    Gene description
    hook microtubule tethering protein 3
    See related
    EnsemblRapid:ENSOJMG00000004282
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oxyura jamaicensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Oxyura
    Orthologs
    human mouse all
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    Genomic context

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    See HOOK3 in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    100 current BPBGC_Ojam_1.0 (GCF_011077185.1) Z NC_048926.1 (53368538..53454450, complement)

    Chromosome Z - NC_048926.1Genomic Context describing neighboring genes Neighboring gene farnesyltransferase, CAAX box, subunit alpha Neighboring gene potassium channel modulatory factor 1 Neighboring gene ring finger protein 170 Neighboring gene THAP domain containing 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_048926.1 Chromosome Z Reference BPBGC_Ojam_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables dynein light intermediate chain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic microtubule organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytoskeleton-dependent intracellular transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein Hook homolog 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oxyura jamaicensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BPBGC_Ojam_1.0

    Genomic

    1. NC_048926.1 Reference BPBGC_Ojam_1.0

      Range
      53368538..53454450 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035310150.1 → XP_035166041.1  protein Hook homolog 3 isoform X3

      Related
      ENSOJMP00000007102.1, ENSOJMT00000007266.1
      Conserved Domains (2) summary
      pfam05622
      Location:184 → 711
      HOOK; HOOK protein
      cl41774
      Location:8 → 160
      HkD_SF; Hook domain-containing proteins superfamily

    2. XM_035310152.1 → XP_035166043.1  protein Hook homolog 3 isoform X5

      Conserved Domains (2) summary
      pfam05622
      Location:184 → 674
      HOOK; HOOK protein
      cl41774
      Location:8 → 160
      HkD_SF; Hook domain-containing proteins superfamily

    3. XM_035310149.1 → XP_035166040.1  protein Hook homolog 3 isoform X2

      Conserved Domains (2) summary
      pfam05622
      Location:184 → 709
      HOOK; HOOK protein
      cl41774
      Location:8 → 160
      HkD_SF; Hook domain-containing proteins superfamily

    4. XM_035310148.1 → XP_035166039.1  protein Hook homolog 3 isoform X1

      Conserved Domains (2) summary
      pfam05622
      Location:184 → 711
      HOOK; HOOK protein
      cl41774
      Location:8 → 160
      HkD_SF; Hook domain-containing proteins superfamily

    5. XM_035310151.1 → XP_035166042.1  protein Hook homolog 3 isoform X4

      Related
      ENSOJMP00000007091.1, ENSOJMT00000007255.1
      Conserved Domains (2) summary
      pfam05622
      Location:184 → 709
      HOOK; HOOK protein
      cl41774
      Location:8 → 160
      HkD_SF; Hook domain-containing proteins superfamily
    Nucleotide Protein
    Heading Accession and Version

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