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    LOC118047962 uncharacterized LOC118047962 [ Populus alba (white poplar) ]

    Gene ID: 118047962, updated on 14-Dec-2024

    Summary

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    Gene symbol
    LOC118047962
    Gene description
    uncharacterized LOC118047962
    Locus tag
    D5086_0000037830
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus alba
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC118047962 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current ASM523922v1 (GCF_005239225.1) Unplaced Scaffold NW_023271065.1 (1473942..1478883, complement)

    NW_023271065.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase prpf4B Neighboring gene uncharacterized LOC118047951 Neighboring gene dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic Neighboring gene protein NRT1/ PTR FAMILY 3.1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023271065 Unplaced Scaffold Reference ASM523922v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC118047962

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus alba Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM523922v1 Primary Assembly

    Genomic

    1. NW_023271065.1 Reference ASM523922v1 Primary Assembly

      Range
      1473942..1478883 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035057456.1 → XP_034913347.1  uncharacterized protein LOC118047962 isoform X3

      Conserved Domains (3) summary
      smart00743
      Location:365 → 417
      Agenet; Tudor-like domain present in plant sequences
      pfam05641
      Location:277 → 332
      Agenet; Agenet domain
      cl02608
      Location:38 → 165
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...

    2. XM_035057472.1 → XP_034913363.1  uncharacterized protein LOC118047962 isoform X3

      Conserved Domains (3) summary
      smart00743
      Location:365 → 417
      Agenet; Tudor-like domain present in plant sequences
      pfam05641
      Location:277 → 332
      Agenet; Agenet domain
      cl02608
      Location:38 → 165
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...

    3. XM_035057464.1 → XP_034913355.1  uncharacterized protein LOC118047962 isoform X3

      Conserved Domains (3) summary
      smart00743
      Location:365 → 417
      Agenet; Tudor-like domain present in plant sequences
      pfam05641
      Location:277 → 332
      Agenet; Agenet domain
      cl02608
      Location:38 → 165
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...

    4. XM_035057440.1 → XP_034913331.1  uncharacterized protein LOC118047962 isoform X1

      UniProtKB/TrEMBL
      A0A4V6ABK3
      Conserved Domains (3) summary
      smart00743
      Location:484 → 536
      Agenet; Tudor-like domain present in plant sequences
      pfam05641
      Location:396 → 451
      Agenet; Agenet domain
      cl02608
      Location:157 → 284
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...

    5. XM_035057447.1 → XP_034913338.1  uncharacterized protein LOC118047962 isoform X2

      Conserved Domains (3) summary
      smart00743
      Location:484 → 536
      Agenet; Tudor-like domain present in plant sequences
      pfam05641
      Location:396 → 451
      Agenet; Agenet domain
      cl02608
      Location:157 → 284
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...
    Nucleotide Protein
    Heading Accession and Version

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