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    LOC118018903 ATP-dependent RNA helicase SUPV3L1, mitochondrial [ Mirounga leonina (Southern elephant seal) ]

    Gene ID: 118018903, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC118018903
    Gene description
    ATP-dependent RNA helicase SUPV3L1, mitochondrial
    Locus tag
    GH733_002003
    See related
    EnsemblRapid:ENSMLOG00005012484
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mirounga leonina
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Mirounga
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    Genomic context

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    See LOC118018903 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current KU_Mleo_1.0 (GCF_011800145.1) Unplaced Scaffold NW_023270233.1 (4759068..4786864)

    NW_023270233.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase assembly protein COX16 homolog, mitochondrial-like Neighboring gene vacuolar protein sorting-associated protein 26A Neighboring gene hexokinase HKDC1 Neighboring gene small EDRK-rich factor 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023270233 Unplaced Scaffold Reference KU_Mleo_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydrolase activity, acting on acid anhydrides IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitochondrial RNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mitochondrial degradosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase SUPV3L1, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mirounga leonina Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KU_Mleo_1.0 Primary Assembly

    Genomic

    1. NW_023270233.1 Reference KU_Mleo_1.0 Primary Assembly

      Range
      4759068..4786864
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035017704.1 → XP_034873595.1  ATP-dependent RNA helicase SUPV3L1, mitochondrial

      Related
      ENSMLOP00005017965.1, ENSMLOT00005020290.1
      Conserved Domains (5) summary
      cd18805
      Location:352 → 490
      SF2_C_suv3; C-terminal helicase domain of ATP-dependent RNA helicase
      cd17913
      Location:203 → 348
      DEXQc_Suv3; DEXQ-box helicase domain of Suv3
      pfam12513
      Location:629 → 675
      SUV3_C; Mitochondrial degradasome RNA helicase subunit C terminal
      pfam18114
      Location:65 → 182
      Suv3_N; Suv3 helical N-terminal domain
      pfam18147
      Location:561 → 601
      Suv3_C_1; Suv3 C-terminal domain 1
    Nucleotide Protein
    Heading Accession and Version

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