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    sptbn5 spectrin, beta, non-erythrocytic 5 [ Pseudochaenichthys georgianus (South Georgia icefish) ]

    Gene ID: 117467954, updated on 19-Mar-2024

    Summary

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    Gene symbol
    sptbn5
    Gene description
    spectrin, beta, non-erythrocytic 5
    See related
    EnsemblRapid:ENSPGEG00000020696
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pseudochaenichthys georgianus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Channichthyidae; Pseudochaenichthys
    Orthologs
    human zebrafish all
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    Genomic context

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    See sptbn5 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    77
    Annotation release Status Assembly Chr Location
    100 current fPseGeo1.1 (GCF_902827115.1) 22 NC_047524.1 (104953..212654, complement)

    Chromosome 22 - NC_047524.1Genomic Context describing neighboring genes Neighboring gene glutamic acid-rich protein-like Neighboring gene forkhead box G1a Neighboring gene EH-domain containing 4 Neighboring gene coagulation factor C homolog, cochlin (Limulus polyphemus)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_047524.1 Chromosome 22 Reference fPseGeo1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cortical actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: spectrin beta chain, non-erythrocytic 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pseudochaenichthys georgianus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fPseGeo1.1

    Genomic

    1. NC_047524.1 Reference fPseGeo1.1

      Range
      104953..212654 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034111901.1 → XP_033967792.1  LOW QUALITY PROTEIN: spectrin beta chain, non-erythrocytic 1

      Related
      ENSPGET00000048787.1
      Conserved Domains (6) summary
      smart00150
      Location:2164 → 2264
      SPEC; Spectrin repeats
      cd00176
      Location:2691 → 2901
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cd21247
      Location:4 → 126
      CH_SPTBN5_rpt1; first calponin homology (CH) domain found in spectrin beta chain, non-erythrocytic 5 (SPTBN5) and similar proteins
      cl00030
      Location:141 → 249
      CH_SF; calponin homology (CH) domain superfamily
      cl02488
      Location:276 → 382
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl17171
      Location:3570 → 3670
      PH-like; Pleckstrin homology-like domain
    Nucleotide Protein
    Heading Accession and Version

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