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    CCNK cyclin K [ Lacerta agilis ]

    Gene ID: 117041391, updated on 19-Mar-2024

    Summary

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    Gene symbol
    CCNK
    Gene description
    cyclin K
    See related
    EnsemblRapid:ENSLAGG00000000054
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lacerta agilis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Lacerta
    Orthologs
    human mouse all
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    Genomic context

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    See CCNK in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current rLacAgi1.pri (GCF_009819535.1) 1 NC_046312.1 (16747882..16759308, complement)

    Chromosome 1 - NC_046312.1Genomic Context describing neighboring genes Neighboring gene HHIP like 1 Neighboring gene U2 spliceosomal RNA Neighboring gene coiled-coil domain containing 85C Neighboring gene SET domain containing 3, actin N3(tau)-histidine methyltransferase Neighboring gene BCL11 transcription factor B Neighboring gene uncharacterized LOC117041411

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_046312.1 Chromosome 1 Reference rLacAgi1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cyclin-dependent protein serine/threonine kinase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription, elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cyclin/CDK positive transcription elongation factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclin-K

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lacerta agilis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rLacAgi1.pri Primary Assembly

    Genomic

    1. NC_046312.1 Reference rLacAgi1.pri Primary Assembly

      Range
      16747882..16759308 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033140145.1 → XP_032996036.1  cyclin-K isoform X2

      Related
      ENSLAGP00000000039.1, ENSLAGT00000000063.1
      Conserved Domains (2) summary
      cd20530
      Location:40 → 154
      CYCLIN_CCNK_rpt1; first cyclin box found in cyclin-K (CCNK) and similar proteins
      cd20531
      Location:158 → 258
      CYCLIN_CCNK_rpt2; second cyclin box found in cyclin-K (CCNK) and similar proteins

    2. XM_033140136.1 → XP_032996027.1  cyclin-K isoform X1

      Related
      ENSLAGP00000000038.1, ENSLAGT00000000062.1
      Conserved Domains (2) summary
      cd20530
      Location:40 → 177
      CYCLIN_CCNK_rpt1; first cyclin box found in cyclin-K (CCNK) and similar proteins
      cd20531
      Location:181 → 281
      CYCLIN_CCNK_rpt2; second cyclin box found in cyclin-K (CCNK) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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