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    Dcn decorin [ Rattus rattus (black rat) ]

    Gene ID: 116908528, updated on 18-Mar-2024

    Summary

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    Gene symbol
    Dcn
    Gene description
    decorin
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus rattus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Orthologs
    human mouse all
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    Genomic context

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    See Dcn in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current Rrattus_CSIRO_v1 (GCF_011064425.1) 1 NC_046154.1 (176687193..176726254)

    Chromosome 1 - NC_046154.1Genomic Context describing neighboring genes Neighboring gene spliceosome-associated protein CWC15 homolog Neighboring gene 60S ribosomal protein L13-like Neighboring gene lumican Neighboring gene keratocan

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_046154.1 Chromosome 1 Reference Rrattus_CSIRO_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Purification and characterization of a small dermatan sulphate proteoglycan implicated in the dilatation of the rat uterine cervix. Kokenyesi R, et al. Biochem J, 1989 Jun 1. PMID 2764879, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    decorin
    Names
    dermatan sulfate proteoglycan-II (decorin)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rattus rattus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rrattus_CSIRO_v1 Primary Assembly

    Genomic

    1. NC_046154.1 Reference Rrattus_CSIRO_v1 Primary Assembly

      Range
      176687193..176726254
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032911714.1 → XP_032767605.1  decorin

      Conserved Domains (3) summary
      PRK15370
      Location:65 → 329
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      smart00013
      Location:48 → 80
      LRRNT; Leucine rich repeat N-terminal domain
      sd00033
      Location:57 → 77
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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