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    SCMH1 Scm polycomb group protein homolog 1 [ Phoca vitulina (harbor seal) ]

    Gene ID: 116649076, updated on 18-Mar-2024

    Summary

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    Gene symbol
    SCMH1
    Gene description
    Scm polycomb group protein homolog 1
    See related
    EnsemblRapid:ENSPVHG00000012772
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Phoca vitulina
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Phoca
    Orthologs
    human mouse all
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    Genomic context

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    See SCMH1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current GSC_HSeal_1.0 (GCF_004348235.1) Unplaced Scaffold NW_022589705.1 (69517014..69695400)

    NW_022589705.1Genomic Context describing neighboring genes Neighboring gene endothelin 2 Neighboring gene forkhead box O6 Neighboring gene schlafen like 1 Neighboring gene CTP synthase 1 Neighboring gene Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022589705 Unplaced Scaffold Reference GSC_HSeal_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polycomb protein SCMH1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Phoca vitulina Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GSC_HSeal_1.0 Primary Assembly

    Genomic

    1. NW_022589705.1 Reference GSC_HSeal_1.0 Primary Assembly

      Range
      69517014..69695400
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032431609.1 → XP_032287500.1  polycomb protein SCMH1 isoform X1

      Conserved Domains (4) summary
      cd09578
      Location:584 → 654
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00561
      Location:45 → 140
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:372 → 480
      SLED; SLED domain
      pfam17208
      Location:285 → 338
      RBR; RNA binding Region

    2. XM_032431592.1 → XP_032287483.1  polycomb protein SCMH1 isoform X1

      Conserved Domains (4) summary
      cd09578
      Location:584 → 654
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00561
      Location:45 → 140
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:372 → 480
      SLED; SLED domain
      pfam17208
      Location:285 → 338
      RBR; RNA binding Region

    3. XM_032431641.1 → XP_032287532.1  polycomb protein SCMH1 isoform X6

      Conserved Domains (3) summary
      cd09578
      Location:464 → 534
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00561
      Location:45 → 140
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:252 → 360
      SLED; SLED domain

    4. XM_032431631.1 → XP_032287522.1  polycomb protein SCMH1 isoform X4

      Conserved Domains (4) summary
      cd09578
      Location:498 → 568
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00561
      Location:65 → 163
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:286 → 394
      SLED; SLED domain
      pfam17208
      Location:199 → 252
      RBR; RNA binding Region

    5. XM_032431632.1 → XP_032287523.1  polycomb protein SCMH1 isoform X5

      Conserved Domains (4) summary
      cd09578
      Location:493 → 563
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00561
      Location:60 → 158
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:281 → 389
      SLED; SLED domain
      pfam17208
      Location:194 → 247
      RBR; RNA binding Region

    6. XM_032431616.1 → XP_032287507.1  polycomb protein SCMH1 isoform X2

      Related
      ENSPVHP00000016203.1, ENSPVHT00000018253.1
      Conserved Domains (4) summary
      cd09578
      Location:580 → 650
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00561
      Location:41 → 136
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:368 → 476
      SLED; SLED domain
      pfam17208
      Location:281 → 334
      RBR; RNA binding Region

    7. XM_032431600.1 → XP_032287491.1  polycomb protein SCMH1 isoform X1

      Conserved Domains (4) summary
      cd09578
      Location:584 → 654
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00561
      Location:45 → 140
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:372 → 480
      SLED; SLED domain
      pfam17208
      Location:285 → 338
      RBR; RNA binding Region

    8. XM_032431627.1 → XP_032287518.1  polycomb protein SCMH1 isoform X3

      Related
      ENSPVHP00000016275.1, ENSPVHT00000018338.1
      Conserved Domains (4) summary
      cd09578
      Location:570 → 640
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00561
      Location:31 → 126
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:358 → 466
      SLED; SLED domain
      pfam17208
      Location:271 → 324
      RBR; RNA binding Region

    9. XM_032431630.1 → XP_032287521.1  polycomb protein SCMH1 isoform X3

      Conserved Domains (4) summary
      cd09578
      Location:570 → 640
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00561
      Location:31 → 126
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:358 → 466
      SLED; SLED domain
      pfam17208
      Location:271 → 324
      RBR; RNA binding Region

    10. XM_032431650.1 → XP_032287541.1  polycomb protein SCMH1 isoform X7

      Conserved Domains (4) summary
      cd09578
      Location:447 → 517
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00561
      Location:14 → 112
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:235 → 343
      SLED; SLED domain
      pfam17208
      Location:148 → 201
      RBR; RNA binding Region

    11. XM_032431667.1 → XP_032287558.1  polycomb protein SCMH1 isoform X8

      Related
      ENSPVHP00000016233.1, ENSPVHT00000018287.1
      Conserved Domains (4) summary
      cd09578
      Location:433 → 503
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00561
      Location:1 → 98
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:221 → 329
      SLED; SLED domain
      pfam17208
      Location:134 → 187
      RBR; RNA binding Region

    12. XM_032431659.1 → XP_032287550.1  polycomb protein SCMH1 isoform X8

      Conserved Domains (4) summary
      cd09578
      Location:433 → 503
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00561
      Location:1 → 98
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:221 → 329
      SLED; SLED domain
      pfam17208
      Location:134 → 187
      RBR; RNA binding Region
    Nucleotide Protein
    Heading Accession and Version

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