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    BSN bassoon presynaptic cytomatrix protein [ Phoca vitulina (harbor seal) ]

    Gene ID: 116636560, updated on 18-Mar-2024

    Summary

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    Gene symbol
    BSN
    Gene description
    bassoon presynaptic cytomatrix protein
    See related
    EnsemblRapid:ENSPVHG00000001606
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Phoca vitulina
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Phoca
    Orthologs
    human mouse all
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    Genomic context

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    See BSN in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current GSC_HSeal_1.0 (GCF_004348235.1) Unplaced Scaffold NW_022589716.1 (7759116..7847101)

    NW_022589716.1Genomic Context describing neighboring genes Neighboring gene nicolin 1, tubulin polyglutamylase complex subunit Neighboring gene dystroglycan 1 Neighboring gene acylaminoacyl-peptide hydrolase Neighboring gene macrophage stimulating 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022589716 Unplaced Scaffold Reference GSC_HSeal_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of presynaptic active zone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in presynaptic active zone assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in GABA-ergic synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoskeleton of presynaptic active zone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in glutamatergic synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein bassoon

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Phoca vitulina Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GSC_HSeal_1.0 Primary Assembly

    Genomic

    1. NW_022589716.1 Reference GSC_HSeal_1.0 Primary Assembly

      Range
      7759116..7847101
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032411295.1 → XP_032267186.1  protein bassoon

      Related
      ENSPVHP00000001883.1, ENSPVHT00000002186.1
      Conserved Domains (5) summary
      PHA03247
      Location:238 → 662
      PHA03247; large tegument protein UL36; Provisional
      PHA03307
      Location:537 → 905
      PHA03307; transcriptional regulator ICP4; Provisional
      PRK12323
      Location:3002 → 3176
      PRK12323; DNA polymerase III subunit gamma/tau
      cd15773
      Location:155 → 218
      FYVE1_BSN; FYVE-related domain 1 found in protein bassoon
      cl28890
      Location:452 → 516
      FYVE_like_SF; FYVE domain like superfamily

    RNA

    1. XR_004300370.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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