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    MARF1 meiosis regulator and mRNA stability factor 1 [ Aythya fuligula (tufted duck) ]

    Gene ID: 116495122, updated on 25-Jun-2024

    Summary

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    Gene symbol
    MARF1
    Gene description
    meiosis regulator and mRNA stability factor 1
    See related
    EnsemblRapid:ENSAFUG00000008203
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Aythya fuligula
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Aythyinae; Aythya
    Orthologs
    human mouse all
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    Genomic context

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    See MARF1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    100 current bAytFul2.pri (GCF_009819795.1) 15 NC_045573.1 (9705971..9730866)

    Chromosome 15 - NC_045573.1Genomic Context describing neighboring genes Neighboring gene myosin heavy chain 11 Neighboring gene nudE neurodevelopment protein 1 Neighboring gene bMERB domain containing 1 Neighboring gene MPV17 mitochondrial inner membrane protein like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045573.1 Chromosome 15 Reference bAytFul2.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables CCR4-NOT complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA base-pairing translational repressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    meiosis regulator and mRNA stability factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Aythya fuligula Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bAytFul2.pri Primary Assembly

    Genomic

    1. NC_045573.1 Reference bAytFul2.pri Primary Assembly

      Range
      9705971..9730866
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032197385.1 → XP_032053276.1  meiosis regulator and mRNA stability factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A6J3DP78
      Related
      ENSAFUP00000011292.1, ENSAFUT00000013703.1
      Conserved Domains (12) summary
      cd09977
      Location:876 → 937
      LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
      cd09978
      Location:1004 → 1074
      LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
      cd09979
      Location:1100 → 1171
      LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
      cd09980
      Location:1176 → 1247
      LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
      cd09981
      Location:1260 → 1330
      LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
      cd09982
      Location:1336 → 1406
      LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
      cd09983
      Location:1412 → 1484
      LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
      cd09984
      Location:1487 → 1562
      LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
      COG0724
      Location:693 → 871
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd10910
      Location:346 → 468
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
      cd12256
      Location:787 → 875
      RRM2_LKAP; RNA recognition motif 2 (RRM2) found in Limkain-b1 (LKAP) and similar proteins
      cl17169
      Location:504 → 589
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_032197386.1 → XP_032053277.1  meiosis regulator and mRNA stability factor 1 isoform X2

      UniProtKB/TrEMBL
      A0A6J3DUH3
      Related
      ENSAFUP00000011302.1, ENSAFUT00000013714.1
      Conserved Domains (12) summary
      cd09977
      Location:876 → 937
      LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
      cd09978
      Location:1004 → 1074
      LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
      cd09979
      Location:1100 → 1171
      LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
      cd09980
      Location:1176 → 1247
      LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
      cd09981
      Location:1260 → 1330
      LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
      cd09982
      Location:1336 → 1406
      LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
      cd09983
      Location:1412 → 1484
      LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
      cd09984
      Location:1487 → 1562
      LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
      COG0724
      Location:693 → 871
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd10910
      Location:346 → 468
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
      cd12256
      Location:787 → 875
      RRM2_LKAP; RNA recognition motif 2 (RRM2) found in Limkain-b1 (LKAP) and similar proteins
      cl17169
      Location:504 → 589
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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