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    dpf1 double PHD fingers 1 [ Anarrhichthys ocellatus (wolf-eel) ]

    Gene ID: 116390765, updated on 18-Mar-2024

    Summary

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    Gene symbol
    dpf1
    Gene description
    double PHD fingers 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anarrhichthys ocellatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Zoarcales; Anarhichadidae; Anarrhichthys
    Orthologs
    human zebrafish all
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    Genomic context

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    See dpf1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current GSC_Weel_1.0 (GCF_004355925.1) Unplaced Scaffold NW_022280054.1 (10418039..10454286, complement)

    NW_022280054.1Genomic Context describing neighboring genes Neighboring gene complement C2-like Neighboring gene TRPM8 channel-associated factor homolog Neighboring gene endonuclease domain-containing 1 protein-like Neighboring gene polynucleotide kinase 3'-phosphatase Neighboring gene zinc finger FYVE domain-containing protein 1-like Neighboring gene NUMB like endocytic adaptor protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022280054 Unplaced Scaffold Reference GSC_Weel_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nBAF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein neuro-d4
    Names
    D4, zinc and double PHD fingers family 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Anarrhichthys ocellatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GSC_Weel_1.0 Primary Assembly

    Genomic

    1. NW_022280054.1 Reference GSC_Weel_1.0 Primary Assembly

      Range
      10418039..10454286 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031860781.1 → XP_031716641.1  zinc finger protein neuro-d4 isoform X3

      Conserved Domains (4) summary
      COG5189
      Location:229 → 257
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      cd15530
      Location:348 → 393
      PHD2_d4; PHD finger 2 found in d4 gene family proteins
      cd15690
      Location:290 → 347
      PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
      pfam14051
      Location:50 → 116
      Requiem_N; N-terminal domain of DPF2/REQ

    2. XM_031860780.1 → XP_031716640.1  zinc finger protein neuro-d4 isoform X2

      Conserved Domains (4) summary
      COG5189
      Location:232 → 260
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      cd15530
      Location:351 → 396
      PHD2_d4; PHD finger 2 found in d4 gene family proteins
      cd15690
      Location:293 → 350
      PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
      pfam14051
      Location:66 → 132
      Requiem_N; N-terminal domain of DPF2/REQ

    3. XM_031860782.1 → XP_031716642.1  zinc finger protein neuro-d4 isoform X4

      Conserved Domains (4) summary
      COG5189
      Location:208 → 236
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      cd15530
      Location:327 → 372
      PHD2_d4; PHD finger 2 found in d4 gene family proteins
      cd15690
      Location:269 → 326
      PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
      pfam14051
      Location:29 → 95
      Requiem_N; N-terminal domain of DPF2/REQ

    4. XM_031860779.1 → XP_031716639.1  zinc finger protein neuro-d4 isoform X1

      Conserved Domains (4) summary
      COG5189
      Location:245 → 273
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      cd15530
      Location:364 → 409
      PHD2_d4; PHD finger 2 found in d4 gene family proteins
      cd15690
      Location:306 → 363
      PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
      pfam14051
      Location:66 → 132
      Requiem_N; N-terminal domain of DPF2/REQ
    Nucleotide Protein
    Heading Accession and Version

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