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    XPA XPA, DNA damage recognition and repair factor [ Phasianus colchicus (ring-necked pheasant) ]

    Gene ID: 116239456, updated on 27-Jul-2024

    Summary

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    Gene symbol
    XPA
    Gene description
    XPA, DNA damage recognition and repair factor
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Phasianus colchicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Phasianus
    Orthologs
    human mouse all
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    Genomic context

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    See XPA in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current ASM414374v1 (GCF_004143745.1) Unplaced Scaffold NW_022206581.1 (142660..150552, complement)

    NW_022206581.1Genomic Context describing neighboring genes Neighboring gene thiosulfate sulfurtransferase like domain containing 2 Neighboring gene nuclear cap binding protein subunit 1 Neighboring gene forkhead box E1 Neighboring gene hemogen

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022206581 Unplaced Scaffold Reference ASM414374v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables damaged DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in UV-damage excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in base-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleotide-excision repair involved in interstrand cross-link repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleotide-excision repair, DNA damage recognition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleotide-excision repair factor 1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA repair protein complementing XP-A cells

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Phasianus colchicus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM414374v1 Primary Assembly

    Genomic

    1. NW_022206581.1 Reference ASM414374v1 Primary Assembly

      Range
      142660..150552 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031609554.1 → XP_031465414.1  DNA repair protein complementing XP-A cells

      Conserved Domains (1) summary
      TIGR00598
      Location:216 → 384
      rad14; DNA repair protein
    Nucleotide Protein
    Heading Accession and Version

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