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    Fign fidgetin, microtubule severing factor [ Mastomys coucha (southern multimammate mouse) ]

    Gene ID: 116090236, updated on 18-Mar-2024

    Summary

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    Gene symbol
    Fign
    Gene description
    fidgetin, microtubule severing factor
    See related
    EnsemblRapid:ENSMCUG00000013388
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mastomys coucha
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mastomys
    Orthologs
    human mouse all
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    Genomic context

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    See Fign in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current UCSF_Mcou_1 (GCF_008632895.1) Unplaced Scaffold NW_022196897.1 (50841454..50958986, complement)

    NW_022196897.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC116090237 Neighboring gene glutamine amidotransferase-like class 1 domain-containing protein 1 pseudogene Neighboring gene small nucleolar RNA SNORA48

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022196897 Unplaced Scaffold Reference UCSF_Mcou_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule severing ATPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    fidgetin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mastomys coucha Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCSF_Mcou_1 Primary Assembly

    Genomic

    1. NW_022196897.1 Reference UCSF_Mcou_1 Primary Assembly

      Range
      50841454..50958986 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031370443.1 → XP_031226303.1  fidgetin isoform X2

      Related
      ENSMCUP00000015062.1, ENSMCUT00000019527.1
      Conserved Domains (1) summary
      COG0464
      Location:460 → 735
      SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]

    2. XM_031370441.1 → XP_031226301.1  fidgetin isoform X2

      Related
      ENSMCUP00000015059.1, ENSMCUT00000019521.1
      Conserved Domains (1) summary
      COG0464
      Location:460 → 735
      SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]

    3. XM_031370442.1 → XP_031226302.1  fidgetin isoform X2

      Related
      ENSMCUP00000015064.1, ENSMCUT00000019530.1
      Conserved Domains (1) summary
      COG0464
      Location:460 → 735
      SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]

    4. XM_031370440.1 → XP_031226300.1  fidgetin isoform X1

      Related
      ENSMCUP00000015050.1, ENSMCUT00000019508.1
      Conserved Domains (1) summary
      COG0464
      Location:471 → 746
      SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]

    5. XM_031370444.1 → XP_031226304.1  fidgetin isoform X2

      Related
      ENSMCUP00000015047.1, ENSMCUT00000019504.1
      Conserved Domains (1) summary
      COG0464
      Location:460 → 735
      SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
    Nucleotide Protein
    Heading Accession and Version

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