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    LOC116000523 probable histone H2A variant 3 [ Ipomoea triloba (trilobed morning glory) ]

    Gene ID: 116000523, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC116000523
    Gene description
    probable histone H2A variant 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ipomoea triloba
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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    Genomic context

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    See LOC116000523 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current ASM357664v1 (GCF_003576645.1) 12 NC_044927.1 (13674873..13678742)

    Chromosome 12 - NC_044927.1Genomic Context describing neighboring genes Neighboring gene replication protein A 70 kDa DNA-binding subunit A-like Neighboring gene uncharacterized LOC115999401 Neighboring gene 3-ketoacyl-CoA synthase 11-like Neighboring gene uncharacterized LOC115999402

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044927.1 Chromosome 12 Reference ASM357664v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable histone H2A variant 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ipomoea triloba Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM357664v1 Primary Assembly

    Genomic

    1. NC_044927.1 Reference ASM357664v1 Primary Assembly

      Range
      13674873..13678742
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031240613.1 → XP_031096473.1  probable histone H2A variant 3

      Conserved Domains (1) summary
      PLN00154
      Location:1 → 138
      PLN00154; histone H2A; Provisional
    Nucleotide Protein
    Heading Accession and Version

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