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    utp15 UTP15 small subunit processome component [ Sparus aurata (gilthead seabream) ]

    Gene ID: 115582483, updated on 17-Mar-2024

    Summary

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    Gene symbol
    utp15
    Gene description
    UTP15 small subunit processome component
    See related
    Ensembl:ENSSAUG00010023864
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sparus aurata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Sparus
    Orthologs
    human zebrafish all
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    Genomic context

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    See utp15 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current fSpaAur1.1 (GCF_900880675.1) 5 NC_044191.1 (24810681..24815703, complement)

    Chromosome 5 - NC_044191.1Genomic Context describing neighboring genes Neighboring gene oncostatin M receptor Neighboring gene rho guanine nucleotide exchange factor 28-like Neighboring gene transcription factor BTF3-like Neighboring gene interleukin 12B 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044191.1 Chromosome 5 Reference fSpaAur1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U3 small nucleolar RNA-associated protein 15 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sparus aurata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSpaAur1.1 Primary Assembly

    Genomic

    1. NC_044191.1 Reference fSpaAur1.1 Primary Assembly

      Range
      24810681..24815703 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030418478.1 → XP_030274338.1  U3 small nucleolar RNA-associated protein 15 homolog

      UniProtKB/TrEMBL
      A0A671Y4K4
      Related
      ENSSAUP00010058459.1, ENSSAUT00010061358.1
      Conserved Domains (3) summary
      cd00200
      Location:72 → 329
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:41 → 78
      7WD40; WD40 repeat [structural motif]
      pfam09384
      Location:345 → 492
      UTP15_C; UTP15 C terminal
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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