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    AlkB alpha-ketoglutarate-dependent dioxygenase AlkB [ Drosophila navojoa ]

    Gene ID: 115565669, updated on 23-May-2024

    Summary

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    Gene symbol
    AlkB
    Gene description
    alpha-ketoglutarate-dependent dioxygenase AlkB
    See related
    EnsemblRapid:LOC115565669
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila navojoa
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    fruit fly all
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    Genomic context

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    See AlkB in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    101 current UFRJ_Dnav_4.2 (GCF_001654015.2) Unplaced Scaffold NW_022053587.1 (44..630)

    NW_022053587.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022053587 Unplaced Scaffold Reference UFRJ_Dnav_4.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables broad specificity oxidative DNA demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ferrous iron binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidative RNA demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in oxidative RNA demethylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleic acid dioxygenase ALKBH1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila navojoa Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UFRJ_Dnav_4.2

    Genomic

    1. NW_022053587.1 Reference UFRJ_Dnav_4.2

      Range
      44..630
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030390875.1 → XP_030246735.1  nucleic acid dioxygenase ALKBH1

      Related
      XP_030246735.1, XM_030390875.1
      Conserved Domains (1) summary
      cl21496
      Location:95 → 172
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
    Nucleotide Protein
    Heading Accession and Version

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