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    ARCN1 archain 1 [ Lynx canadensis (Canada lynx) ]

    Gene ID: 115524496, updated on 13-Aug-2024

    Summary

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    Gene symbol
    ARCN1
    Gene description
    archain 1
    See related
    Ensembl:ENSLCNG00005018358
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lynx canadensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Lynx
    Orthologs
    human mouse all
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    Genomic context

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    See ARCN1 in Genome Data Viewer
    Location:
    chromosome: D1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current mLynCan4.pri.v2 (GCF_007474595.2) D1 NC_044312.2 (16104738..16131760)
    101 previous assembly mLynCan4_v1.p (GCF_007474595.1) D1 NC_044312.1 (16104738..16131760)

    Chromosome D1 - NC_044312.2Genomic Context describing neighboring genes Neighboring gene intraflagellar transport 46 Neighboring gene 60S ribosomal protein L7a-like Neighboring gene U6 spliceosomal RNA Neighboring gene pleckstrin homology like domain family B member 1 Neighboring gene trehalase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi localization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COPI vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    coatomer subunit delta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lynx canadensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mLynCan4.pri.v2

    Genomic

    1. NC_044312.2 Reference mLynCan4.pri.v2

      Range
      16104738..16131760
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030330823.2 → XP_030186683.1  coatomer subunit delta isoform X1

      UniProtKB/TrEMBL
      A0A667HNA0, A0A667ITD4
      Related
      ENSLCNP00005028213.1, ENSLCNT00005031518.1
      Conserved Domains (2) summary
      cd09254
      Location:272 → 508
      AP_delta-COPI_MHD; Mu homology domain (MHD) of adaptor protein (AP) coat protein I (COPI) delta subunit
      cd14830
      Location:4 → 133
      Delta_COP_N; delta subunit of the F-COPI complex, N-terminal domain

    2. XM_030330824.1 → XP_030186684.1  coatomer subunit delta isoform X2

      Conserved Domains (3) summary
      cd09254
      Location:272 → 418
      AP_delta-COPI_MHD; Mu homology domain (MHD) of adaptor protein (AP) coat protein I (COPI) delta subunit
      cd14830
      Location:4 → 133
      Delta_COP_N; delta subunit of the F-COPI complex, N-terminal domain
      pfam16174
      Location:156 → 234
      IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal
    Nucleotide Protein
    Heading Accession and Version

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