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    LOC115444316 synapse-associated protein of 47 kDa [ Manduca sexta (tobacco hornworm) ]

    Gene ID: 115444316, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC115444316
    Gene description
    synapse-associated protein of 47 kDa
    Locus tag
    O3G_MSEX007086
    See related
    EnsemblRapid:ENSMSXG00000007388
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Manduca sexta
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini; Manduca
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC115444316 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current JHU_Msex_v1.0 (GCF_014839805.1) 6 NC_051120.1 (11466083..11537503)
    100 previous assembly Msex_1.0 (GCF_000262585.1) Unplaced Scaffold NW_021942104.1 (463879..533664)

    Chromosome 6 - NC_051120.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115444344 Neighboring gene Ubiquitin specific protease 8 Neighboring gene organic cation transporter protein-like Neighboring gene phospholipase A1 member A Neighboring gene transfer RNA glutamine (anticodon UUG) Neighboring gene transfer RNA glutamine (anticodon UUG)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Integrated modeling of protein-coding genes in the Manduca sexta genome using RNA-Seq data from the biochemical model insect. Cao X, et al. Insect Biochem Mol Biol, 2015 Jul. PMID 25612938, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synapse-associated protein of 47 kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Manduca sexta Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference JHU_Msex_v1.0 Primary Assembly

    Genomic

    1. NC_051120.1 Reference JHU_Msex_v1.0 Primary Assembly

      Range
      11466083..11537503
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037446604.1 → XP_037302501.1  synapse-associated protein of 47 kDa

      UniProtKB/TrEMBL
      A0A922CN03
      Related
      ENSMSXP00000010534.1, ENSMSXT00000012187.1
      Conserved Domains (1) summary
      smart00751
      Location:260 → 307
      BSD; domain in transcription factors and synapse-associated proteins
    Nucleotide Protein
    Heading Accession and Version

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