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    shrprbck1r sharpin and rbck1 related [ Echeneis naucrates (live sharksucker) ]

    Gene ID: 115061240, updated on 17-Mar-2024

    Summary

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    Gene symbol
    shrprbck1r
    Gene description
    sharpin and rbck1 related
    See related
    Ensembl:ENSENLG00000016507
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Echeneis naucrates
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Echeneidae; Echeneis
    Orthologs
    zebrafish all
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    Genomic context

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    See shrprbck1r in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current fEcheNa1.1 (GCF_900963305.1) 20 NC_042530.1 (9650534..9661176)

    Chromosome 20 - NC_042530.1Genomic Context describing neighboring genes Neighboring gene myosin VIIA and Rab interacting protein b Neighboring gene prolactin releasing hormone Neighboring gene 5-oxoprolinase, ATP-hydrolysing Neighboring gene forkhead box H1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042530.1 Chromosome 20 Reference fEcheNa1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein linear polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of LUBAC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ranBP-type and C3HC4-type zinc finger-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Echeneis naucrates Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fEcheNa1.1 Primary Assembly

    Genomic

    1. NC_042530.1 Reference fEcheNa1.1 Primary Assembly

      Range
      9650534..9661176
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029529527.1 → XP_029385387.1  ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A665W220
      Related
      ENSENLP00000038139.1, ENSENLT00000039156.1

    2. XM_029529528.1 → XP_029385388.1  ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A665W220
      Conserved Domains (6) summary
      smart00547
      Location:393 → 414
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:393 → 412
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      cd16633
      Location:474 → 528
      mRING-HC-C3HC3D_RBR_HOIL1; Modified RING finger, HC subclass (C3HC3D-type), found in heme-oxidized IRP2 ubiquitin ligase 1 (HOIL-1) and similar proteins
      cd01799
      Location:220 → 299
      Ubl_HOIL1; ubiquitin-like (Ubl) domain found in heme-oxidized IRP2 ubiquitin ligase 1 (HOIL-1) and similar proteins
      pfam01485
      Location:630 → 670
      IBR; IBR domain, a half RING-finger domain
      pfam16764
      Location:33 → 151
      Sharpin_PH; Sharpin PH domain
    Nucleotide Protein
    Heading Accession and Version

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