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    ckap2l cytoskeleton associated protein 2-like [ Betta splendens (Siamese fighting fish) ]

    Gene ID: 114862836, updated on 20-Aug-2024

    Summary

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    Gene symbol
    ckap2l
    Gene description
    cytoskeleton associated protein 2-like
    See related
    EnsemblRapid:ENSBSLG00000016503
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Betta splendens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Osphronemidae; Betta
    Orthologs
    zebrafish all
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    Genomic context

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    See ckap2l in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2023_04 current fBetSpl5.4 (GCF_900634795.4) 9 NC_040889.2 (27202083..27212464)
    101 previous assembly fBetSpl5.3 (GCF_900634795.3) 9 NC_040889.1 (27676311..27686895)

    Chromosome 9 - NC_040889.2Genomic Context describing neighboring genes Neighboring gene metal transporter CNNM4 Neighboring gene interleukin-1 beta-like Neighboring gene transcriptional activator protein Pur-beta Neighboring gene histone H2A.V

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitotic spindle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytoskeleton-associated protein 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_900634795.4-RS_2023_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fBetSpl5.4 Primary Assembly

    Genomic

    1. NC_040889.2 Reference fBetSpl5.4 Primary Assembly

      Range
      27202083..27212464
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029163558.3 → XP_029019391.2  cytoskeleton-associated protein 2-like

      UniProtKB/TrEMBL
      A0A6P7NHT3, A0A6P7NMY5
      Related
      ENSBSLP00000034102.2, ENSBSLT00000037709.3
      Conserved Domains (1) summary
      pfam15297
      Location:422 → 727
      CKAP2_C; Cytoskeleton-associated protein 2 C-terminus

    2. XM_055512171.1 → XP_055368146.1  cytoskeleton-associated protein 2-like

      UniProtKB/TrEMBL
      A0A6P7NHT3, A0A6P7NMY5

    3. XM_055512172.1 → XP_055368147.1  cytoskeleton-associated protein 2-like

      UniProtKB/TrEMBL
      A0A6P7NHT3, A0A6P7NMY5

    4. XM_055512173.1 → XP_055368148.1  cytoskeleton-associated protein 2-like

      UniProtKB/TrEMBL
      A0A6P7NHT3, A0A6P7NMY5
    Nucleotide Protein
    Heading Accession and Version

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