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    Krtap5-5 keratin associated protein 5-5 [ Mus musculus (house mouse) ]

    Gene ID: 114666, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Krtap5-5provided by MGI
    Official Full Name
    keratin associated protein 5-5provided by MGI
    Primary source
    MGI:MGI:2149673
    See related
    Ensembl:ENSMUSG00000073785 AllianceGenome:MGI:2149673
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A030001H12Rik
    Summary
    Acts upstream of or within hematopoietic progenitor cell differentiation. Predicted to be located in intermediate filament. Orthologous to human KRTAP5-5 (keratin associated protein 5-5). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See Krtap5-5 in Genome Data Viewer
    Location:
    7 F5; 7 87.78 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (141782532..141783708, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (142228795..142229971, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene keratin associated protein 5-21 Neighboring gene STARR-seq mESC enhancer starr_20501 Neighboring gene potassium channel tetramerisation domain containing 18 pseudogene Neighboring gene STARR-seq mESC enhancer starr_20502 Neighboring gene keratin associated protein 5-24 Neighboring gene predicted gene, 46022 Neighboring gene keratin-associated protein 5-1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular evolution of the keratin associated protein gene family in mammals, role in the evolution of mammalian hair. Wu DD, et al. BMC Evol Biol, 2008 Aug 23. PMID 18721477, Free PMC Article
    2. Haploinsufficiency of SAMD9L, an endosome fusion facilitator, causes myeloid malignancies in mice mimicking human diseases with monosomy 7. Nagamachi A, et al. Cancer Cell, 2013 Sep 9. PMID 24029230
    3. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Clone Names

    • MGC130543

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within hematopoietic progenitor cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in intermediate filament IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    keratin-associated protein 5-5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037822.1 → NP_001032911.1  keratin-associated protein 5-5

      See identical proteins and their annotated locations for NP_001032911.1

      Status: PROVISIONAL

      Source sequence(s)
      BC111113
      Consensus CDS
      CCDS22026.1
      UniProtKB/Swiss-Prot
      Q2TA51
      Related
      ENSMUSP00000095555.3, ENSMUST00000097942.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      141782532..141783708 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2TA51.1 GenPept UniProtKB/Swiss-Prot:Q2TA51

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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