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    LOC114569186 caskin-2-like [ Perca flavescens (yellow perch) ]

    Gene ID: 114569186, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC114569186
    Gene description
    caskin-2-like
    Locus tag
    EPR50_G00164460
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Perca flavescens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
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    Genomic context

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    See LOC114569186 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current PFLA_1.0 (GCF_004354835.1) 15 NC_041345.1 (31415298..31492464)

    Chromosome 15 - NC_041345.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114569222 Neighboring gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 Neighboring gene uncharacterized LOC114570230 Neighboring gene major vault protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_041345.1 Chromosome 15 Reference PFLA_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    caskin-2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PFLA_1.0 Primary Assembly

    Genomic

    1. NC_041345.1 Reference PFLA_1.0 Primary Assembly

      Range
      31415298..31492464
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028598973.1 → XP_028454774.1  caskin-2-like isoform X1

      UniProtKB/TrEMBL
      A0A484CIY0
      Conserved Domains (10) summary
      PTZ00449
      Location:1051 → 1199
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      cd09497
      Location:529 → 594
      SAM_caskin1,2_repeat1; SAM domain of caskin protein repeat 1
      cd09498
      Location:595 → 665
      SAM_caskin1,2_repeat2; SAM domain of caskin protein repeat 2
      cd12063
      Location:284 → 345
      SH3_Caskin2; Src Homology 3 domain of CASK interacting protein 2
      PHA03095
      Location:41 → 258
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:114 → 145
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:7 → 69
      Ank_4; Ankyrin repeats (many copies)
      pfam16600
      Location:422 → 460
      Caskin1-CID; Caskin1 CASK-interaction domain
      pfam16632
      Location:1277 → 1335
      Caskin-tail; C-terminal region of Caskin
      pfam16907
      Location:873 → 969
      Caskin-Pro-rich; Proline rich region of Caskin proteins

    2. XM_028598974.1 → XP_028454775.1  caskin-2-like isoform X2

      UniProtKB/TrEMBL
      A0A484CIY0
      Conserved Domains (9) summary
      PTZ00449
      Location:1026 → 1174
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      cd09497
      Location:504 → 569
      SAM_caskin1,2_repeat1; SAM domain of caskin protein repeat 1
      cd09498
      Location:570 → 640
      SAM_caskin1,2_repeat2; SAM domain of caskin protein repeat 2
      cd12063
      Location:284 → 345
      SH3_Caskin2; Src Homology 3 domain of CASK interacting protein 2
      PHA03095
      Location:41 → 258
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:114 → 145
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:7 → 69
      Ank_4; Ankyrin repeats (many copies)
      pfam16632
      Location:1252 → 1310
      Caskin-tail; C-terminal region of Caskin
      pfam16907
      Location:848 → 944
      Caskin-Pro-rich; Proline rich region of Caskin proteins

    3. XM_028598976.1 → XP_028454777.1  caskin-2-like isoform X3

      UniProtKB/TrEMBL
      A0A484CIY0
      Conserved Domains (9) summary
      PTZ00449
      Location:968 → 1116
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      cd09497
      Location:446 → 511
      SAM_caskin1,2_repeat1; SAM domain of caskin protein repeat 1
      cd09498
      Location:512 → 582
      SAM_caskin1,2_repeat2; SAM domain of caskin protein repeat 2
      cd12063
      Location:284 → 345
      SH3_Caskin2; Src Homology 3 domain of CASK interacting protein 2
      PHA03095
      Location:41 → 258
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:114 → 145
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:7 → 69
      Ank_4; Ankyrin repeats (many copies)
      pfam16632
      Location:1194 → 1252
      Caskin-tail; C-terminal region of Caskin
      pfam16907
      Location:790 → 886
      Caskin-Pro-rich; Proline rich region of Caskin proteins
    Nucleotide Protein
    Heading Accession and Version

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