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    LOC11444926 pentatricopeptide repeat-containing protein At1g08070, chloroplastic [ Medicago truncatula (barrel medic) ]

    Gene ID: 11444926, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11444926
    Gene description
    pentatricopeptide repeat-containing protein At1g08070, chloroplastic
    Locus tag
    MtrunA17_Chr4g0063341
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11444926 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (54958103..54960412, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (46846937..46849325, complement)

    Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic Neighboring gene protein kinase PINOID 2 Neighboring gene early nodulin-93 Neighboring gene uncharacterized LOC112421178 Neighboring gene zinc finger Ran-binding domain-containing protein 2 Neighboring gene zinc finger CCCH domain-containing protein 39

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At1g08070, chloroplastic
    Names
    putative tetratricopeptide-like helical domain, DYW domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      54958103..54960412 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003609218.3 → XP_003609266.1  pentatricopeptide repeat-containing protein At1g08070, chloroplastic

      See identical proteins and their annotated locations for XP_003609266.1

      UniProtKB/TrEMBL
      G7JVA7
      Conserved Domains (2) summary
      sd00004
      Location:230 → 257
      PPR; PPR repeat [structural motif]
      cl25449
      Location:76 → 736
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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