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    LOC114403493 pentatricopeptide repeat-containing protein At5g02860-like [ Glycine soja ]

    Gene ID: 114403493, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC114403493
    Gene description
    pentatricopeptide repeat-containing protein At5g02860-like
    Locus tag
    D0Y65_053981
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine soja
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC114403493 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current ASM419377v2 (GCF_004193775.1) 20 NC_041021.1 (40217844..40220996)

    Chromosome 20 - NC_041021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114401360 Neighboring gene uncharacterized LOC114403375 Neighboring gene probable protein phosphatase 2C 63 Neighboring gene probable E3 ubiquitin-protein ligase RHY1A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_041021.1 Chromosome 20 Reference ASM419377v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At5g02860-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine soja Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM419377v2 Primary Assembly

    Genomic

    1. NC_041021.1 Reference ASM419377v2 Primary Assembly

      Range
      40217844..40220996
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028366518.1 → XP_028222319.1  pentatricopeptide repeat-containing protein At5g02860-like

      UniProtKB/TrEMBL
      A0A445F4N8
      Conserved Domains (4) summary
      PLN03218
      Location:253 → 782
      PLN03218; maturation of RBCL 1; Provisional
      TIGR00756
      Location:215 → 249
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:287 → 314
      PPR; PPR repeat [structural motif]
      pfam13812
      Location:165 → 227
      PPR_3; Pentatricopeptide repeat domain
    Nucleotide Protein
    Heading Accession and Version

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