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    LOC11436749 histone H3.2 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11436749, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11436749
    Gene description
    histone H3.2
    Locus tag
    MtrunA17_Chr8g0383781
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11436749 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (42960950..42961612)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (38799158..38799842)

    Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene protein BOLA2 Neighboring gene uncharacterized LOC120577293 Neighboring gene telomere repeat-binding factor 1 Neighboring gene histone H3.2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone H3.2
    Names
    core histone H2A/H2B/H3/H4
    putative transcription factor Hap3/NF-YB family

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      42960950..42961612
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003630137.4 → XP_003630185.1  histone H3.2

      See identical proteins and their annotated locations for XP_003630185.1

      UniProtKB/TrEMBL
      A0A0C3V151, A0A0C3XFM4, B7FN22, G7INA8, G7KDP2, G7LCB2, I3SHA6
      Conserved Domains (1) summary
      PTZ00018
      Location:1 → 136
      PTZ00018; histone H3; Provisional
    Nucleotide Protein
    Heading Accession and Version

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