U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC11424611 dof zinc finger protein DOF5.7 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11424611, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC11424611
    Gene description
    dof zinc finger protein DOF5.7
    Locus tag
    MtrunA17_Chr8g0367161
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC11424611 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (30911958..30913612)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (28436963..28438594)

    Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112417403 Neighboring gene probable mannitol dehydrogenase Neighboring gene uncharacterized tRNA/rRNA methyltransferase slr1673 Neighboring gene probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    dof zinc finger protein DOF5.7
    Names
    Dof domain zinc finger protein
    putative transcription factor C2C2-Dof family

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      30911958..30913612
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003628835.3 → XP_003628883.1  dof zinc finger protein DOF5.7

      See identical proteins and their annotated locations for XP_003628883.1

      UniProtKB/TrEMBL
      G7LIJ3
      Conserved Domains (1) summary
      pfam02701
      Location:31 → 86
      zf-Dof; Dof domain, zinc finger
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases