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    LOC11406935 protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic [ Medicago truncatula (barrel medic) ]

    Gene ID: 11406935, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11406935
    Gene description
    protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic
    Locus tag
    MtrunA17_Chr3g0077191
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11406935 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 3 NC_053044.1 (72439..76082)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 3 NC_016409.2 (61367..65019)

    Chromosome 3 - NC_053044.1Genomic Context describing neighboring genes Neighboring gene carboxymethylenebutenolidase homolog Neighboring gene DNA replication complex GINS protein PSF1 Neighboring gene UPF0301 protein MAB_4928c Neighboring gene phenylacetaldehyde reductase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phospholipid transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phospholipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ATP-binding cassette (ABC) transporter complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic
    Names
    ABC transporter
    putative ABC transporter permease MalE

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053044.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      72439..76082
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024780120.2 → XP_024635888.1  protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic

      UniProtKB/TrEMBL
      A0A396ILY3, G7IYB6
      Conserved Domains (1) summary
      PLN03100
      Location:56 → 346
      PLN03100; Permease subunit of ER-derived-lipid transporter; Provisional

    2. XM_003597949.4 → XP_003597997.1  protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic

      See identical proteins and their annotated locations for XP_003597997.1

      UniProtKB/TrEMBL
      A0A396ILY3, G7IYB6
      Conserved Domains (1) summary
      PLN03100
      Location:56 → 346
      PLN03100; Permease subunit of ER-derived-lipid transporter; Provisional

    3. XM_039832264.1 → XP_039688198.1  protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic

      UniProtKB/TrEMBL
      A0A396ILY3, G7IYB6
      Conserved Domains (1) summary
      PLN03100
      Location:56 → 346
      PLN03100; Permease subunit of ER-derived-lipid transporter; Provisional
    Nucleotide Protein
    Heading Accession and Version

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