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    LOC114059548 regucalcin [ Empidonax traillii (willow flycatcher) ]

    Gene ID: 114059548, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LOC114059548
    Gene description
    regucalcin
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Empidonax traillii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Tyrannidae; Empidonax
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    Genomic context

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    See LOC114059548 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    100 current ASM303162v1 (GCF_003031625.1) Unplaced Scaffold NW_020955424.1 (889341..975248, complement)

    NW_020955424.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol specific phospholipase C X domain containing 1 Neighboring gene regucalcin-like Neighboring gene RP2 activator of ARL3 GTPase Neighboring gene solute carrier family 9 member A7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020955424 Unplaced Scaffold Reference ASM303162v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables enzyme regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables gluconolactonase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-ascorbic acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein Jade-3; regucalcin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Empidonax traillii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM303162v1

    Genomic

    1. NW_020955424.1 Reference ASM303162v1

      Range
      889341..975248 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027888114.1 → XP_027743915.1  protein Jade-3 isoform X1

    2. XM_027888118.1 → XP_027743919.1  regucalcin isoform X5

    3. XM_027888115.1 → XP_027743916.1  protein Jade-3 isoform X2

    4. XM_027888116.1 → XP_027743917.1  protein Jade-3 isoform X3

    5. XM_027888117.1 → XP_027743918.1  protein Jade-3 isoform X4

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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