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    POLR3A RNA polymerase III subunit A [ Zalophus californianus (California sea lion) ]

    Gene ID: 113923389, updated on 15-Mar-2024

    Summary

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    Gene symbol
    POLR3A
    Gene description
    RNA polymerase III subunit A
    See related
    EnsemblRapid:ENSZCAG00025021628
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zalophus californianus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus
    Orthologs
    human mouse all
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    Genomic context

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    See POLR3A in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    101 current mZalCal1.pri.v2 (GCF_009762305.2) 15 NC_045609.1 (38205100..38256190, complement)
    100 previous assembly zalCal2.2 (GCF_900631625.1) Unplaced Scaffold NW_020874462.1 (49704835..49755699)

    Chromosome 15 - NC_045609.1Genomic Context describing neighboring genes Neighboring gene potassium calcium-activated channel subfamily M alpha 1 Neighboring gene discs large MAGUK scaffold protein 5 Neighboring gene uncharacterized LOC113923557 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-directed 5'-3' RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase III subunit RPC1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zalophus californianus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mZalCal1.pri.v2 Primary Assembly

    Genomic

    1. NC_045609.1 Reference mZalCal1.pri.v2 Primary Assembly

      Range
      38205100..38256190 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027595985.2 → XP_027451786.1  DNA-directed RNA polymerase III subunit RPC1 isoform X1

      UniProtKB/TrEMBL
      A0A6J2D7I1

    2. XM_027595986.2 → XP_027451787.1  DNA-directed RNA polymerase III subunit RPC1 isoform X2

      UniProtKB/TrEMBL
      A0A6J2DA98
      Related
      ENSZCAP00025034136.1, ENSZCAT00025038562.1
      Conserved Domains (3) summary
      cd02736
      Location:1021 → 1360
      RNAP_III_Rpc1_C; Largest subunit (Rpc1) of Eukaryotic RNA polymerase III (RNAP III), C-terminal domain
      CHL00117
      Location:841 → 1058
      rpoC2; RNA polymerase beta'' subunit; Reviewed
      cd02583
      Location:24 → 891
      RNAP_III_RPC1_N; Largest subunit (RPC1) of eukaryotic RNA polymerase III (RNAP III), N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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