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    LOC113767326 respiratory burst oxidase homolog protein C-like [ Coffea eugenioides ]

    Gene ID: 113767326, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC113767326
    Gene description
    respiratory burst oxidase homolog protein C-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Coffea eugenioides
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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    Genomic context

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    See LOC113767326 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current Ceug_1.0 (GCF_003713205.1) 4 NC_040038.1 (4292208..4299166)

    Chromosome 4 - NC_040038.1Genomic Context describing neighboring genes Neighboring gene chaperone protein ClpD, chloroplastic Neighboring gene uncharacterized LOC113767518 Neighboring gene uncharacterized LOC113768655 Neighboring gene germin-like protein subfamily 3 member 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_040038.1 Chromosome 4 Reference Ceug_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD(P)H oxidase H2O2-forming activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    respiratory burst oxidase homolog protein C-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Coffea eugenioides Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ceug_1.0

    Genomic

    1. NC_040038.1 Reference Ceug_1.0

      Range
      4292208..4299166
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027311376.1 → XP_027167177.1  respiratory burst oxidase homolog protein C-like

    Nucleotide Protein
    Heading Accession and Version

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