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    ikzf5 IKAROS family zinc finger 5 [ Pangasianodon hypophthalmus (striped catfish) ]

    Gene ID: 113547733, updated on 15-Mar-2024

    Summary

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    Gene symbol
    ikzf5
    Gene description
    IKAROS family zinc finger 5
    Locus tag
    PHYPO_G00011930
    See related
    EnsemblRapid:ENSPHYG00025001989
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pangasianodon hypophthalmus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
    Orthologs
    human zebrafish all
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    Genomic context

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    See ikzf5 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 10 NC_069719.1 (1736592..1750002)

    Chromosome 10 - NC_069719.1Genomic Context describing neighboring genes Neighboring gene homeobox protein HMX3-A Neighboring gene H6 family homeobox 2 Neighboring gene CUB and zona pellucida-like domain-containing protein 1 Neighboring gene cubilin-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_069719.1 Chromosome 10 Reference fPanHyp1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein Pegasus

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fPanHyp1.pri

    Genomic

    1. NC_069719.1 Reference fPanHyp1.pri

      Range
      1736592..1750002
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026948195.3 → XP_026803996.1  zinc finger protein Pegasus

      UniProtKB/TrEMBL
      A0A5N5N2Y9
      Related
      ENSPHYP00025003547.1, ENSPHYT00025004244.1
      Conserved Domains (2) summary
      sd00017
      Location:81 → 101
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:121 → 145
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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