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    ptgs2b prostaglandin-endoperoxide synthase 2b [ Pangasianodon hypophthalmus (striped catfish) ]

    Gene ID: 113546811, updated on 15-Mar-2024

    Summary

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    Gene symbol
    ptgs2b
    Gene description
    prostaglandin-endoperoxide synthase 2b
    Locus tag
    PHYPO_G00091270
    See related
    EnsemblRapid:ENSPHYG00025006239
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pangasianodon hypophthalmus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
    Orthologs
    zebrafish all
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    Genomic context

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    See ptgs2b in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 19 NC_069728.1 (2118239..2125415, complement)

    Chromosome 19 - NC_069728.1Genomic Context describing neighboring genes Neighboring gene proteoglycan 4b Neighboring gene translocated promoter region b, nuclear basket protein Neighboring gene phosducin b Neighboring gene phospholipase A2, group IVAb (cytosolic, calcium-dependent) Neighboring gene adenylate kinase 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_069728.1 Chromosome 19 Reference fPanHyp1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables prostaglandin-endoperoxide synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cyclooxygenase pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prostaglandin G/H synthase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fPanHyp1.pri

    Genomic

    1. NC_069728.1 Reference fPanHyp1.pri

      Range
      2118239..2125415 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026946871.3 → XP_026802672.1  prostaglandin G/H synthase 2

      UniProtKB/TrEMBL
      A0A5N5LA77
      Related
      ENSPHYP00025013903.1, ENSPHYT00025015206.1
      Conserved Domains (2) summary
      cd09816
      Location:77 → 565
      prostaglandin_endoperoxide_synthase; Animal prostaglandin endoperoxide synthase and related bacterial proteins
      cd00054
      Location:21 → 57
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    Nucleotide Protein
    Heading Accession and Version

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