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    BRD1 bromodomain containing 1 [ Pseudonaja textilis ]

    Gene ID: 113445104, updated on 15-Mar-2024

    Summary

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    Gene symbol
    BRD1
    Gene description
    bromodomain containing 1
    See related
    Ensembl:ENSPTXG00000006039
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pseudonaja textilis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Pseudonaja
    Orthologs
    human mouse all
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    Genomic context

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    See BRD1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current EBS10Xv2-PRI (GCF_900518735.1) Unplaced Scaffold NW_020769374.1 (4742357..4790261)

    NW_020769374.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113445058 Neighboring gene ALG12 alpha-1,6-mannosyltransferase Neighboring gene zinc finger BED-type containing 4 Neighboring gene uncharacterized LOC113445072

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020769374 Unplaced Scaffold Reference EBS10Xv2-PRI

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MOZ/MORF histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bromodomain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pseudonaja textilis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EBS10Xv2-PRI

    Genomic

    1. NW_020769374.1 Reference EBS10Xv2-PRI

      Range
      4742357..4790261
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026714108.1 → XP_026569893.1  bromodomain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A670YBF2
      Related
      ENSPTXP00000008353.1, ENSPTXT00000008643.1
      Conserved Domains (4) summary
      cd05839
      Location:1054 → 1169
      BR140_related; The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, ...
      cd05512
      Location:565 → 662
      Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
      cd15702
      Location:271 → 388
      ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
      cl26518
      Location:10 → 575
      EPL1; Enhancer of polycomb-like

    2. XM_026714107.1 → XP_026569892.1  bromodomain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A670YBF2
      Conserved Domains (4) summary
      cd05839
      Location:1054 → 1169
      BR140_related; The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, ...
      cd05512
      Location:565 → 662
      Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
      cd15702
      Location:271 → 388
      ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
      cl26518
      Location:10 → 575
      EPL1; Enhancer of polycomb-like

    3. XM_026714109.1 → XP_026569894.1  bromodomain-containing protein 1 isoform X2

      Conserved Domains (4) summary
      cd05839
      Location:926 → 1041
      BR140_related; The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, ...
      cd05512
      Location:565 → 662
      Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
      cd15702
      Location:271 → 388
      ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
      cl26518
      Location:10 → 575
      EPL1; Enhancer of polycomb-like

    4. XM_026714110.1 → XP_026569895.1  bromodomain-containing protein 1 isoform X3

      Conserved Domains (3) summary
      cd05512
      Location:565 → 662
      Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
      cd15702
      Location:271 → 388
      ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
      cl26518
      Location:10 → 575
      EPL1; Enhancer of polycomb-like
    Nucleotide Protein
    Heading Accession and Version

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