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    Hmg-2 High mobility group protein 2 [ Ctenocephalides felis (cat flea) ]

    Gene ID: 113388017, updated on 15-May-2024

    Summary

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    Gene symbol
    Hmg-2
    Gene description
    High mobility group protein 2
    See related
    EnsemblRapid:LOC113388017
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ctenocephalides felis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Siphonaptera; Pulicidae; Archaeopsyllinae; Ctenocephalides
    Orthologs
    fruit fly all
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    Genomic context

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    See Hmg-2 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current ASM342690v1 (GCF_003426905.1) Unplaced Scaffold NW_020539726.1 (40768739..40792694, complement)

    NW_020539726.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 287-like Neighboring gene small integral membrane protein 4 Neighboring gene uncharacterized protein C12orf73 homolog Neighboring gene calcyclin-binding protein Neighboring gene 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha-like Neighboring gene zinc finger protein Xfin-like Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial-like Neighboring gene uncharacterized LOC113388495

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020539726 Unplaced Scaffold Reference ASM342690v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    high mobility group protein 20A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ctenocephalides felis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM342690v1

    Genomic

    1. NW_020539726.1 Reference ASM342690v1

      Range
      40768739..40792694 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026625423.1 → XP_026481208.1  high mobility group protein 20A isoform X1

      Related
      XP_026481208.1, XM_026625423.1
      Conserved Domains (2) summary
      COG5648
      Location:35 → 196
      NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
      cd01390
      Location:55 → 120
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

    2. XM_026625425.1 → XP_026481210.1  high mobility group protein 20A isoform X3

      Related
      XP_026481210.1, XM_026625425.1
      Conserved Domains (1) summary
      cd01390
      Location:55 → 120
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

    3. XM_026625424.1 → XP_026481209.1  high mobility group protein 20A isoform X2

      Related
      XP_026481209.1, XM_026625424.1
      Conserved Domains (2) summary
      COG5648
      Location:35 → 196
      NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
      cd01390
      Location:55 → 120
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
    Nucleotide Protein
    Heading Accession and Version

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