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    LOC113114942 amyloid-like protein 1 [ Carassius auratus (goldfish) ]

    Gene ID: 113114942, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC113114942
    Gene description
    amyloid-like protein 1
    See related
    Ensembl:ENSCARG00000004937
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carassius auratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
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    Genomic context

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    See LOC113114942 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current ASM336829v1 (GCF_003368295.1) 15 NC_039257.1 (8147078..8193781, complement)

    Chromosome 15 - NC_039257.1Genomic Context describing neighboring genes Neighboring gene chymotrypsin-like protease CTRL-1 Neighboring gene chymotrypsin-like protease CTRL-1 Neighboring gene suppressor of tumorigenicity 14 protein homolog Neighboring gene kin of IRRE-like protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_039257.1 Chromosome 15 Reference ASM336829v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-2A adrenergic receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables alpha-2B adrenergic receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables alpha-2C adrenergic receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables heparin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transition metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in central nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amyloid-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carassius auratus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM336829v1 Primary Assembly

    Genomic

    1. NC_039257.1 Reference ASM336829v1 Primary Assembly

      Range
      8147078..8193781 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026282066.1 → XP_026137851.1  amyloid-like protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A6P6QXC9

    2. XM_026282067.1 → XP_026137852.1  amyloid-like protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A6P6QWS8
      Related
      ENSCARP00000010643.1, ENSCART00000011243.1

    3. XM_026282065.1 → XP_026137850.1  amyloid-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A6P6QZF7
      Related
      ENSCARP00000010630.1, ENSCART00000011226.1
    Nucleotide Protein Strain
    Heading Accession and Version

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