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    LOC113057226 suppressor of cytokine signaling 5-like [ Carassius auratus (goldfish) ]

    Gene ID: 113057226, updated on 11-Apr-2024

    Summary

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    Gene symbol
    LOC113057226
    Gene description
    suppressor of cytokine signaling 5-like
    See related
    Ensembl:ENSCARG00000058600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carassius auratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
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    Genomic context

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    See LOC113057226 in Genome Data Viewer
    Location:
    chromosome: 38
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current ASM336829v1 (GCF_003368295.1) 38 NC_039280.1 (15897783..15909394)

    Chromosome 38 - NC_039280.1Genomic Context describing neighboring genes Neighboring gene endothelial PAS domain protein 1b Neighboring gene protein kinase C, epsilon b Neighboring gene multiple coagulation factor deficiency protein 2-like Neighboring gene PROP paired-like homeobox 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_039280.1 Chromosome 38 Reference ASM336829v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1-phosphatidylinositol-3-kinase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell surface receptor signaling pathway via JAK-STAT IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in epidermal growth factor receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphatidylinositol phosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of phosphatidylinositol 3-kinase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    suppressor of cytokine signaling 5-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carassius auratus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM336829v1 Primary Assembly

    Genomic

    1. NC_039280.1 Reference ASM336829v1 Primary Assembly

      Range
      15897783..15909394
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026224456.1 → XP_026080241.1  suppressor of cytokine signaling 5-like isoform X2

      UniProtKB/TrEMBL
      A0A6P6LA37

    2. XM_026224455.1 → XP_026080240.1  suppressor of cytokine signaling 5-like isoform X1

      UniProtKB/TrEMBL
      A0A6P6L6V5
      Related
      ENSCARP00000113732.1, ENSCART00000127263.1
    Nucleotide Protein Strain
    Heading Accession and Version

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