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    ZACN zinc activated ion channel [ Vulpes vulpes (red fox) ]

    Gene ID: 112920818, updated on 15-Mar-2024

    Summary

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    Gene symbol
    ZACN
    Gene description
    zinc activated ion channel
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vulpes vulpes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
    Orthologs
    human all
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    Genomic context

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    See ZACN in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current VulVul2.2 (GCF_003160815.1) Unplaced Scaffold NW_020356466.1 (12536291..12541673)

    NW_020356466.1Genomic Context describing neighboring genes Neighboring gene envoplakin Neighboring gene signal recognition particle 68 Neighboring gene galanin receptor 2 Neighboring gene exocyst complex component 7 Neighboring gene forkhead box J1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020356466 Unplaced Scaffold Reference VulVul2.2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular ligand-gated monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables neurotransmitter receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nervous system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of membrane potential IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc-activated ligand-gated ion channel

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Vulpes vulpes Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference VulVul2.2 Primary Assembly

    Genomic

    1. NW_020356466.1 Reference VulVul2.2 Primary Assembly

      Range
      12536291..12541673
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025999803.1 → XP_025855588.1  zinc-activated ligand-gated ion channel isoform X1

      UniProtKB/TrEMBL
      A0A3Q7SH00
      Conserved Domains (1) summary
      cl27321
      Location:57 → 292
      Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain

    2. XM_025999804.1 → XP_025855589.1  zinc-activated ligand-gated ion channel isoform X2

      UniProtKB/TrEMBL
      A0A3Q7S817
      Conserved Domains (1) summary
      cl27321
      Location:57 → 317
      Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    Nucleotide Protein Strain
    Heading Accession and Version

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