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    LOC112807956 ATPase family AAA domain-containing protein 1 [ Callorhinus ursinus (northern fur seal) ]

    Gene ID: 112807956, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC112807956
    Gene description
    ATPase family AAA domain-containing protein 1
    See related
    EnsemblRapid:ENSCURG00000020833
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callorhinus ursinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Callorhinus
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    Genomic context

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    See LOC112807956 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current ASM326570v1 (GCF_003265705.1) Unplaced Scaffold NW_020313034.1 (6928049..6998686, complement)

    NW_020313034.1Genomic Context describing neighboring genes Neighboring gene multiple inositol polyphosphate phosphatase 1 Neighboring gene bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 Neighboring gene uncharacterized LOC112807960 Neighboring gene phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and protein-tyrosine-phosphatase PTEN2A-like Neighboring gene phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020313034 Unplaced Scaffold Reference ASM326570v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATPase family AAA domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Callorhinus ursinus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM326570v1 Primary Assembly

    Genomic

    1. NW_020313034.1 Reference ASM326570v1 Primary Assembly

      Range
      6928049..6998686 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025850904.1 → XP_025706689.1  ATPase family AAA domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q7MIE9
      Conserved Domains (2) summary
      COG0464
      Location:113 → 373
      SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
      cl26147
      Location:33 → 175
      Lon; ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

    2. XM_025850905.1 → XP_025706690.1  ATPase family AAA domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q7MIE9
      Conserved Domains (2) summary
      COG0464
      Location:113 → 373
      SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
      cl26147
      Location:33 → 175
      Lon; ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

    3. XM_025850907.1 → XP_025706692.1  ATPase family AAA domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q7MIK7
      Conserved Domains (2) summary
      pfam17862
      Location:282 → 321
      AAA_lid_3; AAA+ lid domain
      cd19520
      Location:92 → 257
      RecA-like_ATAD1; ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains

    4. XM_025850906.1 → XP_025706691.1  ATPase family AAA domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A3Q7NTH1
      Related
      ENSCURP00000033935.1, ENSCURT00000038761.1
      Conserved Domains (1) summary
      COG0464
      Location:102 → 362
      SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]

    5. XM_025850911.1 → XP_025706696.1  ATPase family AAA domain-containing protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A3Q7MIL6
      Related
      ENSCURP00000033931.1, ENSCURT00000038757.1
      Conserved Domains (2) summary
      pfam17862
      Location:224 → 263
      AAA_lid_3; AAA+ lid domain
      cd19520
      Location:34 → 199
      RecA-like_ATAD1; ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains

    6. XM_025850912.1 → XP_025706697.1  ATPase family AAA domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q7MIE9
      Conserved Domains (2) summary
      COG0464
      Location:113 → 373
      SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
      cl26147
      Location:33 → 175
      Lon; ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

    7. XM_025850913.1 → XP_025706698.1  ATPase family AAA domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q7MIK7
      Related
      ENSCURP00000033937.1, ENSCURT00000038763.1
      Conserved Domains (2) summary
      pfam17862
      Location:282 → 321
      AAA_lid_3; AAA+ lid domain
      cd19520
      Location:92 → 257
      RecA-like_ATAD1; ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains

    8. XM_025850910.1 → XP_025706695.1  ATPase family AAA domain-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A3Q7MIH7
      Conserved Domains (1) summary
      COG0464
      Location:43 → 303
      SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]

    9. XM_025850908.1 → XP_025706693.1  ATPase family AAA domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A3Q7MIK9
      Conserved Domains (1) summary
      COG0464
      Location:72 → 332
      SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]

    10. XM_025850909.1 → XP_025706694.1  ATPase family AAA domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A3Q7MIK9
      Conserved Domains (1) summary
      COG0464
      Location:72 → 332
      SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
    Nucleotide Protein
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