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    LOC112528445 soluble starch synthase 1, chloroplastic/amyloplastic [ Cynara cardunculus subsp. cardunculus ]

    Gene ID: 112528445, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC112528445
    Gene description
    soluble starch synthase 1, chloroplastic/amyloplastic
    Locus tag
    Ccrd_011379
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cynara cardunculus subsp. cardunculus (sub-species: cardunculus)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara
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    Genomic context

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    See LOC112528445 in Genome Data Viewer
    Location:
    chromosome: LG 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current CcrdV1 (GCF_001531365.1) LG 1 NC_037528.1 (2717..6727)

    Chromosome LG 1 - NC_037528.1Genomic Context describing neighboring genes Neighboring gene PP2A regulatory subunit TAP46-like Neighboring gene trichohyalin Neighboring gene putative aminoacrylate hydrolase RutD

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037528.1 Chromosome LG 1 Reference CcrdV1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    soluble starch synthase 1, chloroplastic/amyloplastic
    Names
    Glycogen/starch synthase, ADP-glucose type

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cynara cardunculus subsp. cardunculus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CcrdV1

    Genomic

    1. NC_037528.1 Reference CcrdV1

      Range
      2717..6727
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025139474.1 → XP_024995242.1  soluble starch synthase 1, chloroplastic/amyloplastic isoform X1

      UniProtKB/TrEMBL
      A0A103YJF8
      Conserved Domains (2) summary
      cd03791
      Location:127 → 628
      GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
      cl27006
      Location:49 → 124
      Trigger_N; Bacterial trigger factor protein (TF)

    2. XM_025139480.1 → XP_024995248.1  soluble starch synthase 1, chloroplastic/amyloplastic isoform X2

      UniProtKB/TrEMBL
      A0A103YJF8
      Conserved Domains (2) summary
      cd03791
      Location:127 → 627
      GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
      cl27006
      Location:49 → 124
      Trigger_N; Bacterial trigger factor protein (TF)

    3. XM_025139485.1 → XP_024995253.1  soluble starch synthase 1, chloroplastic/amyloplastic isoform X3

      UniProtKB/TrEMBL
      A0A103YJF8
      Conserved Domains (1) summary
      cd03791
      Location:108 → 540
      GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
    Nucleotide Protein
    Heading Accession and Version

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