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    LOC112521737 uncharacterized LOC112521737 [ Cynara cardunculus subsp. cardunculus ]

    Gene ID: 112521737, updated on 28-Jun-2024

    Summary

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    Gene symbol
    LOC112521737
    Gene description
    uncharacterized LOC112521737
    Locus tag
    Ccrd_007912
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cynara cardunculus subsp. cardunculus (sub-species: cardunculus)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara
    Also known as
    Ubiquitin
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    Genomic context

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    See LOC112521737 in Genome Data Viewer
    Location:
    chromosome: LG 11
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    100 current CcrdV1 (GCF_001531365.1) LG 11 NC_037538.1 (11521144..11535682, complement)

    Chromosome LG 11 - NC_037538.1Genomic Context describing neighboring genes Neighboring gene actin-depolymerizing factor 7-like Neighboring gene actin-depolymerizing factor 7-like Neighboring gene uncharacterized LOC112521841 Neighboring gene uncharacterized LOC112521558 Neighboring gene DEAD-box ATP-dependent RNA helicase 8-like Neighboring gene remorin-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037538.1 Chromosome LG 11 Reference CcrdV1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables misfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of BAT3 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC112521737

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cynara cardunculus subsp. cardunculus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CcrdV1

    Genomic

    1. NC_037538.1 Reference CcrdV1

      Range
      11521144..11535682 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025130735.1 → XP_024986503.1  uncharacterized protein LOC112521737

      UniProtKB/TrEMBL
      A0A103XG42
      Conserved Domains (2) summary
      cd01809
      Location:139 → 210
      Scythe_N; Ubiquitin-like domain of Scythe protein
      cl02475
      Location:998 → 1036
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    Nucleotide Protein
    Heading Accession and Version

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