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    LOC112486272 interferon-induced, double-stranded RNA-activated protein kinase-like [ Cynoglossus semilaevis (tongue sole) ]

    Gene ID: 112486272, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC112486272
    Gene description
    interferon-induced, double-stranded RNA-activated protein kinase-like
    See related
    Ensembl:ENSCSEG00000012878
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cynoglossus semilaevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
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    Genomic context

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    See LOC112486272 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    102 current Cse_v1.0 (GCF_000523025.1) 12 NC_024318.1 (13356453..13363750)

    Chromosome 12 - NC_024318.1Genomic Context describing neighboring genes Neighboring gene G patch domain containing 11 Neighboring gene eukaryotic translation initiation factor 2-alpha kinase 2 Neighboring gene interferon regulatory factor 2 binding protein 2a Neighboring gene small nucleolar RNA SNORA14 Neighboring gene translocase of outer mitochondrial membrane 20

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_024318.1 Chromosome 12 Reference Cse_v1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    interferon-induced, double-stranded RNA-activated protein kinase-like
    Names
    PKR-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cse_v1.0 Primary Assembly

    Genomic

    1. NC_024318.1 Reference Cse_v1.0 Primary Assembly

      Range
      13356453..13363750
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025061071.1 → XP_024916839.1  interferon-induced, double-stranded RNA-activated protein kinase-like isoform X2

      UniProtKB/TrEMBL
      A0A3P8VY74, I3QDC8
      Related
      ENSCSEP00000020208.1, ENSCSET00000020457.1
      Conserved Domains (3) summary
      smart00358
      Location:218 → 283
      DSRM; Double-stranded RNA binding motif
      pfam00035
      Location:14 → 66
      dsrm; Double-stranded RNA binding motif
      cl21453
      Location:357 → 628
      PKc_like; Protein Kinases, catalytic domain

    2. XM_025061070.1 → XP_024916838.1  interferon-induced, double-stranded RNA-activated protein kinase-like isoform X1

      UniProtKB/TrEMBL
      I3QDC8
      Conserved Domains (3) summary
      smart00358
      Location:225 → 290
      DSRM; Double-stranded RNA binding motif
      pfam00035
      Location:14 → 66
      dsrm; Double-stranded RNA binding motif
      cl21453
      Location:364 → 635
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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