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    NECAP1 NECAP endocytosis associated 1 [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

    Gene ID: 112391949, updated on 15-Mar-2024

    Summary

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    Gene symbol
    NECAP1
    Gene description
    NECAP endocytosis associated 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
    Orthologs
    human mouse all
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    Genomic context

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    See NECAP1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020176571.1 (6592031..6604222, complement)

    NW_020176571.1Genomic Context describing neighboring genes Neighboring gene C-type lectin domain family 4 member E-like Neighboring gene C-type lectin domain family 4 member D-like Neighboring gene complement C3a receptor 1 Neighboring gene forkhead box J2 Neighboring gene translation initiation factor IF-2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020176571 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of clathrin vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    adaptin ear-binding coat-associated protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Genomic

    1. NW_020176571.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

      Range
      6592031..6604222 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024733531.1 → XP_024589299.1  adaptin ear-binding coat-associated protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A341AHH1
      Conserved Domains (2) summary
      pfam07933
      Location:7 → 164
      DUF1681; Protein of unknown function (DUF1681)
      cl26247
      Location:161 → 275
      DNA_pol3_delta2; DNA polymerase III, delta subunit

    2. XM_024733532.1 → XP_024589300.1  adaptin ear-binding coat-associated protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A341AFA7
      Conserved Domains (1) summary
      pfam07933
      Location:7 → 164
      DUF1681; Protein of unknown function (DUF1681)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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