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    LOC112289766 polyadenylate-binding protein RBP47B'-like [ Physcomitrium patens ]

    Gene ID: 112289766, updated on 20-Sep-2024

    Summary

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    Gene symbol
    LOC112289766
    Gene description
    polyadenylate-binding protein RBP47B'-like
    Locus tag
    PHYPA_016112
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Physcomitrium patens
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrium
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    Genomic context

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    See LOC112289766 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current Phypa V3 (GCF_000002425.4) 12 NC_037264.1 (7378396..7385583, complement)

    Chromosome 12 - NC_037264.1Genomic Context describing neighboring genes Neighboring gene polyadenylate-binding protein RBP47B'-like Neighboring gene zinc finger protein GIS2-like Neighboring gene uncharacterized LOC112289204 Neighboring gene myosin-10-like Neighboring gene uncharacterized LOC112289517

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037264.1 Chromosome 12 Reference Phypa V3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyadenylate-binding protein RBP45-like; polyadenylate-binding protein RBP47B'-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Physcomitrella patens Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Phypa V3 Primary Assembly

    Genomic

    1. NC_037264.1 Reference Phypa V3 Primary Assembly

      Range
      7378396..7385583 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024535317.1 → XP_024391085.1  polyadenylate-binding protein RBP47B'-like isoform X1

      UniProtKB/TrEMBL
      A0A2K1JQB4, A0A7I4FNM6
      Conserved Domains (3) summary
      cd12344
      Location:44 → 124
      RRM1_SECp43_like; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12345
      Location:135 → 214
      RRM2_SECp43_like; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12346
      Location:256 → 327
      RRM3_NGR1_NAM8_like; RNA recognition motif 3 in yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8 and similar proteins

    2. XM_024535316.1 → XP_024391084.1  polyadenylate-binding protein RBP47B'-like isoform X1

      UniProtKB/TrEMBL
      A0A2K1JQB4, A0A7I4FNM6
      Conserved Domains (3) summary
      cd12344
      Location:44 → 124
      RRM1_SECp43_like; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12345
      Location:135 → 214
      RRM2_SECp43_like; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12346
      Location:256 → 327
      RRM3_NGR1_NAM8_like; RNA recognition motif 3 in yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8 and similar proteins

    3. XM_024535312.1 → XP_024391080.1  polyadenylate-binding protein RBP47B'-like isoform X1

      UniProtKB/TrEMBL
      A0A2K1JQB4, A0A7I4FNM6
      Conserved Domains (3) summary
      cd12344
      Location:44 → 124
      RRM1_SECp43_like; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12345
      Location:135 → 214
      RRM2_SECp43_like; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12346
      Location:256 → 327
      RRM3_NGR1_NAM8_like; RNA recognition motif 3 in yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8 and similar proteins

    4. XM_024535318.1 → XP_024391086.1  polyadenylate-binding protein RBP47B'-like isoform X2

      UniProtKB/TrEMBL
      A0A7I4FNM6
      Conserved Domains (4) summary
      cd12344
      Location:44 → 124
      RRM1_SECp43_like; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12345
      Location:135 → 214
      RRM2_SECp43_like; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12346
      Location:256 → 327
      RRM3_NGR1_NAM8_like; RNA recognition motif 3 in yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8 and similar proteins
      cl25887
      Location:151 → 431
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    5. XM_024535315.1 → XP_024391083.1  polyadenylate-binding protein RBP47B'-like isoform X1

      UniProtKB/TrEMBL
      A0A2K1JQB4, A0A7I4FNM6
      Conserved Domains (3) summary
      cd12344
      Location:44 → 124
      RRM1_SECp43_like; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12345
      Location:135 → 214
      RRM2_SECp43_like; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12346
      Location:256 → 327
      RRM3_NGR1_NAM8_like; RNA recognition motif 3 in yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8 and similar proteins

    6. XM_024535313.1 → XP_024391081.1  polyadenylate-binding protein RBP47B'-like isoform X1

      UniProtKB/TrEMBL
      A0A2K1JQB4, A0A7I4FNM6
      Conserved Domains (3) summary
      cd12344
      Location:44 → 124
      RRM1_SECp43_like; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12345
      Location:135 → 214
      RRM2_SECp43_like; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12346
      Location:256 → 327
      RRM3_NGR1_NAM8_like; RNA recognition motif 3 in yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8 and similar proteins

    7. XM_024535314.1 → XP_024391082.1  polyadenylate-binding protein RBP47B'-like isoform X1

      UniProtKB/TrEMBL
      A0A2K1JQB4, A0A7I4FNM6
      Conserved Domains (3) summary
      cd12344
      Location:44 → 124
      RRM1_SECp43_like; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12345
      Location:135 → 214
      RRM2_SECp43_like; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12346
      Location:256 → 327
      RRM3_NGR1_NAM8_like; RNA recognition motif 3 in yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8 and similar proteins

    8. XM_024535319.1 → XP_024391087.1  polyadenylate-binding protein RBP45-like isoform X3

      UniProtKB/TrEMBL
      A0A7I4FNM6
      Conserved Domains (3) summary
      cd12344
      Location:44 → 124
      RRM1_SECp43_like; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12345
      Location:135 → 214
      RRM2_SECp43_like; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12346
      Location:256 → 327
      RRM3_NGR1_NAM8_like; RNA recognition motif 3 in yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8 and similar proteins

    9. XM_024535320.1 → XP_024391088.1  polyadenylate-binding protein RBP45-like isoform X4

      UniProtKB/TrEMBL
      A0A7I4FNM6
      Conserved Domains (3) summary
      cd12344
      Location:44 → 124
      RRM1_SECp43_like; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12345
      Location:135 → 214
      RRM2_SECp43_like; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12346
      Location:256 → 327
      RRM3_NGR1_NAM8_like; RNA recognition motif 3 in yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8 and similar proteins
    Nucleotide Protein
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