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    LOC111882586 ethylene-responsive transcription factor RAP2-7 [ Lactuca sativa (garden lettuce) ]

    Gene ID: 111882586, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC111882586
    Gene description
    ethylene-responsive transcription factor RAP2-7
    Locus tag
    LSAT_V11C900463600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lactuca sativa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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    Genomic context

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    See LOC111882586 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 9 NC_056631.2 (22885645..22888911, complement)
    101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 9 NC_056631.1 (22680662..22683968, complement)

    Chromosome 9 - NC_056631.2Genomic Context describing neighboring genes Neighboring gene L-ascorbate peroxidase 2, cytosolic Neighboring gene uncharacterized LOC111882575 Neighboring gene uncharacterized LOC111879655 Neighboring gene uncharacterized LOC128128571

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    APETALA2-like protein 2; ethylene-responsive transcription factor RAP2-7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Lsat_Salinas_v11 Primary Assembly

    Genomic

    1. NC_056631.2 Reference Lsat_Salinas_v11 Primary Assembly

      Range
      22885645..22888911 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023878952.3 → XP_023734720.1  APETALA2-like protein 2 isoform X1

    2. XM_023878956.3 → XP_023734724.1  ethylene-responsive transcription factor RAP2-7 isoform X5

    3. XM_023878954.3 → XP_023734722.1  APETALA2-like protein 2 isoform X3

    4. XM_023878953.3 → XP_023734721.1  APETALA2-like protein 2 isoform X2

    5. XM_023878957.3 → XP_023734725.1  ethylene-responsive transcription factor RAP2-7 isoform X6

    6. XM_023878955.3 → XP_023734723.1  APETALA2-like protein 2 isoform X4

      UniProtKB/TrEMBL
      A0A9R1WUP5
    Nucleotide Protein
    Heading Accession and Version

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