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    sh3rf1 SH3 domain containing ring finger 1 [ Seriola lalandi dorsalis ]

    Gene ID: 111660154, updated on 15-Mar-2024

    Summary

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    Gene symbol
    sh3rf1
    Gene description
    SH3 domain containing ring finger 1
    See related
    Ensembl:ENSSLDG00000021808
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Seriola lalandi dorsalis (sub-species: dorsalis)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
    Orthologs
    human zebrafish all
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    Genomic context

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    See sh3rf1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current Sedor1 (GCF_002814215.1) Unplaced Scaffold NW_019525064.1 (256933..288722, complement)

    NW_019525064.1Genomic Context describing neighboring genes Neighboring gene anaphase promoting complex subunit 4 Neighboring gene palladin, cytoskeletal associated protein Neighboring gene carbonyl reductase 4 Neighboring gene NIMA-related kinase 1 Neighboring gene F-box and leucine-rich repeat protein 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019525064 Unplaced Scaffold Reference Sedor1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase SH3RF1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Seriola lalandi dorsalis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sedor1 Primary Assembly

    Genomic

    1. NW_019525064.1 Reference Sedor1 Primary Assembly

      Range
      256933..288722 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023413306.1 → XP_023269074.1  E3 ubiquitin-protein ligase SH3RF1 isoform X2

      Conserved Domains (6) summary
      cd11785
      Location:775 → 829
      SH3_SH3RF_C; C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains
      cd11926
      Location:396 → 450
      SH3_SH3RF1_3; Third Src Homology 3 domain of SH3 domain containing ring finger 1, an E3 ubiquitin-protein ligase
      cd11927
      Location:133 → 186
      SH3_SH3RF1_1; First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase
      cd11930
      Location:196 → 250
      SH3_SH3RF1_2; Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase
      cl17238
      Location:8 → 55
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl26386
      Location:471 → 638
      DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

    2. XM_023413305.1 → XP_023269073.1  E3 ubiquitin-protein ligase SH3RF1 isoform X1

      UniProtKB/TrEMBL
      A0A3B4YEX2
      Related
      ENSSLDP00000028167.1, ENSSLDT00000029009.1
      Conserved Domains (6) summary
      cd11785
      Location:812 → 866
      SH3_SH3RF_C; C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains
      cd11926
      Location:433 → 487
      SH3_SH3RF1_3; Third Src Homology 3 domain of SH3 domain containing ring finger 1, an E3 ubiquitin-protein ligase
      cd11927
      Location:133 → 186
      SH3_SH3RF1_1; First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase
      cd11930
      Location:196 → 250
      SH3_SH3RF1_2; Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase
      cl17238
      Location:8 → 55
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl26386
      Location:508 → 675
      DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    Nucleotide Protein
    Heading Accession and Version

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