U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    si:ch73-40i7.2 FYN-binding protein 1-like [ Xiphophorus maculatus (southern platyfish) ]

    Gene ID: 111609755, updated on 15-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    si:ch73-40i7.2
    Gene description
    FYN-binding protein 1-like
    See related
    Ensembl:ENSXMAG00000000726
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus maculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
    Orthologs
    zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See si:ch73-40i7.2 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    102 current X_maculatus-5.0-male (GCF_002775205.1) 9 NC_036451.1 (29422775..29440023)

    Chromosome 9 - NC_036451.1Genomic Context describing neighboring genes Neighboring gene prostaglandin E2 receptor EP4 subtype-like Neighboring gene disabled homolog 2-like Neighboring gene small integral membrane protein 7 Neighboring gene transmembrane protein 38A

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_036451.1 Chromosome 9 Reference X_maculatus-5.0-male Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in T cell receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in integrin-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    FYN-binding protein 1-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference X_maculatus-5.0-male Primary Assembly

    Genomic

    1. NC_036451.1 Reference X_maculatus-5.0-male Primary Assembly

      Range
      29422775..29440023
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023340023.1 → XP_023195791.1  FYN-binding protein 1-like

      UniProtKB/TrEMBL
      M3ZET2
      Related
      ENSXMAP00000000724.1, ENSXMAT00000000726.2
      Conserved Domains (3) summary
      pfam14603
      Location:454 → 526
      hSH3; Helically-extended SH3 domain
      cl17036
      Location:323 → 378
      SH3; Src Homology 3 domain superfamily
      cl26464
      Location:19 → 211
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases