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    LOC111435162 zinc finger CCCH domain-containing protein 44-like [ Cucurbita moschata (crookneck pumpkin) ]

    Gene ID: 111435162, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111435162
    Gene description
    zinc finger CCCH domain-containing protein 44-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita moschata
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111435162 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268519.1 (6147531..6159031)

    NW_019268519.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111432435 Neighboring gene zinc finger protein GIS2-like Neighboring gene cytochrome P450 84A1-like Neighboring gene small nucleolar RNA Z247

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019268519 Unplaced Scaffold Reference Cmos_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger CCCH domain-containing protein 44-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmos_1.0

    Genomic

    1. NW_019268519.1 Reference Cmos_1.0

      Range
      6147531..6159031
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023072531.1 → XP_022928299.1  zinc finger CCCH domain-containing protein 44-like

      UniProtKB/TrEMBL
      A0A6J1EKF5
      Conserved Domains (6) summary
      smart00719
      Location:870 → 979
      Plus3; Short conserved domain in transcriptional regulators
      smart00356
      Location:1734 → 1756
      ZnF_C3H1; zinc finger
      cd00072
      Location:1218 → 1273
      GYF; GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte activity. Also present in other unrelated proteins (mainly unknown) derived from diverse eukaryotic species.
      cd15568
      Location:513 → 558
      PHD5_NSD; PHD finger 5 found in nuclear receptor-binding SET domain-containing (NSD) proteins
      pfam02201
      Location:736 → 809
      SWIB; SWIB/MDM2 domain
      cl27975
      Location:1296 → 1656
      EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)
    Nucleotide Protein
    Heading Accession and Version

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