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    LOC111406901 pentatricopeptide repeat-containing protein At1g05670, mitochondrial [ Olea europaea var. sylvestris ]

    Gene ID: 111406901, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111406901
    Gene description
    pentatricopeptide repeat-containing protein At1g05670, mitochondrial
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Olea europaea var. sylvestris (sub-species: europaea, variety: sylvestris)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea
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    Genomic context

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    See LOC111406901 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current O_europaea_v1 (GCF_002742605.1) 12 NC_036248.1 (30967631..30981989)

    Chromosome 12 - NC_036248.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111406386 Neighboring gene hydroxyproline O-galactosyltransferase GALT6-like Neighboring gene uncharacterized LOC111406388 Neighboring gene uncharacterized LOC111406389 Neighboring gene thioredoxin H2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036248.1 Chromosome 12 Reference O_europaea_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glutathione transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glutathione metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At1g05670, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Olea europaea var. sylvestris Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference O_europaea_v1 Primary Assembly

    Genomic

    1. NC_036248.1 Reference O_europaea_v1 Primary Assembly

      Range
      30967631..30981989
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023036263.1 → XP_022892031.1  pentatricopeptide repeat-containing protein At1g05670, mitochondrial

      Conserved Domains (6) summary
      cd03185
      Location:1005 → 1135
      GST_C_Tau; C-terminal, alpha helical domain of Class Tau Glutathione S-transferases
      cd03058
      Location:921 → 994
      GST_N_Tau; GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, ...
      TIGR00756
      Location:678 → 707
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:468 → 495
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:604 → 653
      PPR_2; PPR repeat family
      cl25449
      Location:259 → 609
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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