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    LOC110791435 photosystem I reaction center subunit XI, chloroplastic-like [ Spinacia oleracea (spinach) ]

    Gene ID: 110791435, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC110791435
    Gene description
    photosystem I reaction center subunit XI, chloroplastic-like
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Spinacia oleracea
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
    Also known as
    psaL; PSI-L
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    Genomic context

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    See LOC110791435 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_06 current BTI_SOV_V1 (GCF_020520425.1) 4 NC_079490.1 (4612127..4615426)
    100 previous assembly ASM200726v1 (GCF_002007265.1) Unplaced Scaffold NW_018931732.1 (183933..187203)

    Chromosome 4 - NC_079490.1Genomic Context describing neighboring genes Neighboring gene WRKY transcription factor SUSIBA2-like Neighboring gene protein METHYLENE BLUE SENSITIVITY 1-like Neighboring gene tyrosine-protein phosphatase DSP5 Neighboring gene CRIB domain-containing protein RIC4 Neighboring gene pentatricopeptide repeat-containing protein At4g21065-like Neighboring gene probable diphthine methyl ester synthase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and characterization of cDNA clones encoding a 18.8 kDa polypeptide, the product of the gene psaL, associated with photosystem I reaction center from spinach. Flieger K, et al. Plant Mol Biol, 1993 Jul. PMID 8343606
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in photosynthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of photosystem I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of photosystem I reaction center IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    photosystem I reaction center subunit XI, chloroplastic
    Names
    PSI subunit V
    subunit XI of photosystem I reaction center

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001426418.1 → NP_001413347.1  photosystem I reaction center subunit XI, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      IADT01052657, WWFT01000004, X64445
      UniProtKB/Swiss-Prot
      Q41385
      UniProtKB/TrEMBL
      A0A9R0JYK9

    RefSeqs of Annotated Genomes: GCF_020520425.1-RS_2023_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BTI_SOV_V1 Primary Assembly

    Genomic

    1. NC_079490.1 Reference BTI_SOV_V1 Primary Assembly

      Range
      4612127..4615426
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021996182.2 → XP_021851874.2  photosystem I reaction center subunit XI, chloroplastic

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q41385.1 GenPept UniProtKB/Swiss-Prot:Q41385

    Gene LinkOut

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    Molecular Biology Databases