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    LOC110785252 30S ribosomal protein S9, chloroplastic-like [ Spinacia oleracea (spinach) ]

    Gene ID: 110785252, updated on 31-Jan-2024

    Summary

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    Gene symbol
    LOC110785252
    Gene description
    30S ribosomal protein S9, chloroplastic-like
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Spinacia oleracea
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
    Also known as
    PrpS9
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    Genomic context

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    See LOC110785252 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_06 current BTI_SOV_V1 (GCF_020520425.1) 3 NC_079489.1 (41808973..41814972, complement)
    100 previous assembly ASM200726v1 (GCF_002007265.1) Unplaced Scaffold NW_018931464.1 (597183..603404)

    Chromosome 3 - NC_079489.1Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin-protein ligase ARI2 Neighboring gene uncharacterized LOC110785266 Neighboring gene uncharacterized LOC130470302 Neighboring gene uncharacterized LOC110785265 Neighboring gene uncharacterized LOC110785264

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The plastid ribosomal proteins. Identification of all the proteins in the 30 S subunit of an organelle ribosome (chloroplast). Yamaguchi K, et al. J Biol Chem, 2000 Sep 15. PMID 10874039
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mitochondrial small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of plastid small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein uS9c; 30S ribosomal protein S9, chloroplastic
    Names
    Chloroplastic small ribosomal subunit protein uS9c
    plastid ribosomal protein S9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001426360.1 → NP_001413289.1  small ribosomal subunit protein uS9c

      Status: VALIDATED

      Source sequence(s)
      AF242547, IADT01052839
      UniProtKB/Swiss-Prot
      A0A0K9RY17, P82278
      UniProtKB/TrEMBL
      A0A9R0IA45

    RefSeqs of Annotated Genomes: GCF_020520425.1-RS_2023_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BTI_SOV_V1 Primary Assembly

    Genomic

    1. NC_079489.1 Reference BTI_SOV_V1 Primary Assembly

      Range
      41808973..41814972 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021989700.2 → XP_021845392.1  30S ribosomal protein S9, chloroplastic

      UniProtKB/Swiss-Prot
      A0A0K9RY17, P82278
      UniProtKB/TrEMBL
      A0A9R0IA45
      Conserved Domains (1) summary
      CHL00079
      Location:83 → 208
      rps9; ribosomal protein S9

    2. XM_021989699.2 → XP_021845391.1  30S ribosomal protein S9, chloroplastic

      Conserved Domains (1) summary
      CHL00079
      Location:83 → 208
      rps9; ribosomal protein S9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P82278.2 GenPept UniProtKB/Swiss-Prot:P82278

    Gene LinkOut

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    Molecular Biology Databases