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    LOC110517266 lysozyme g [ Oncorhynchus mykiss (rainbow trout) ]

    Gene ID: 110517266, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC110517266
    Gene description
    lysozyme g
    See related
    Ensembl:ENSOMYG00000035326
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus mykiss
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
    Also known as
    LYG
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    Genomic context

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    See LOC110517266 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current USDA_OmykA_1.1 (GCF_013265735.2) 13 NC_048577.1 (19861757..19864464)
    100 previous assembly Omyk_1.0 (GCF_002163495.1) Unplaced Scaffold NW_018592949.1 (244..1694, complement)

    Chromosome 13 - NC_048577.1Genomic Context describing neighboring genes Neighboring gene putative uncharacterized protein DDB_G0278921 Neighboring gene lysozyme g Neighboring gene lysozyme g Neighboring gene dual specificity mitogen-activated protein kinase kinase 7 Neighboring gene serine/threonine-protein kinase N1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lysozyme activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidoglycan catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysozyme g

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_OmykA_1.1 Primary Assembly

    Genomic

    1. NC_048577.1 Reference USDA_OmykA_1.1 Primary Assembly

      Range
      19861757..19864464
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036940524.1 → XP_036796419.1  lysozyme g

      UniProtKB/TrEMBL
      A0A8C7T0J9, C1BF55
      Related
      ENSOMYP00000076373.2, ENSOMYT00000083127.2
      Conserved Domains (1) summary
      cd01021
      Location:25 → 212
      GEWL; Goose egg-white lysozyme
    Nucleotide Protein
    Heading Accession and Version

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